RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 C18orf25Q96B23 403 aaPredicted RBP13.57□□□□□ -0.24
SLIRP-209ENST00000557342 KLHL5Q96PQ7 755 aa13.57□□□□□ -0.24
SLIRP-209ENST00000557342 TTPALQ9BTX7 342 aa13.57□□□□□ -0.24
SLIRP-209ENST00000557342 IKZF4Q9H2S9 585 aa13.57□□□□□ -0.24
SLIRP-209ENST00000557342 RXFP1Q9HBX9 757 aa13.57□□□□□ -0.24
SLIRP-209ENST00000557342 SLC39A2Q9NP94 309 aa13.57□□□□□ -0.24
SLIRP-209ENST00000557342 CLEC1BQ9P126 229 aa13.57□□□□□ -0.24
SLIRP-209ENST00000557342 CGNQ9P2M7 1197 aaKnown RBP13.57□□□□□ -0.24
SLIRP-209ENST00000557342 HCFC2Q9Y5Z7 792 aa13.57□□□□□ -0.24
SLIRP-209ENST00000557342 EXTL3O43909 919 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 C1RP00736 705 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 RPN1P04843 607 aaKnown RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 ADH1AP07327 375 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 CNPP09543 421 aaKnown RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 HOXB8P17481 243 aaPredicted RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 LRPAP1P30533 357 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 SMAD4Q13485 552 aaKnown RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 TMEM132DQ14C87 1099 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 BMT2Q1RMZ1 405 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 LLGL2Q6P1M3 1020 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 ELMSAN1Q6PJG2 1045 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 CRELD2Q6UXH1 353 aaPredicted RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 HS2ST1Q7LGA3 356 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 CEP57Q86XR8 500 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 FMR1NBQ8N0W7 255 aaPredicted RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 GPD1LQ8N335 351 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 GLIS3Q8NEA6 775 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 VN1R2Q8NFZ6 395 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 SCFD1Q8WVM8 642 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 RIN2Q8WYP3 895 aaPredicted RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 MSLNLQ96KJ4 702 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 CBWD1Q9BRT8 395 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 FAM213AQ9BRX8 229 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 KIAA1586Q9HCI6 787 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 DZANK1Q9NVP4 752 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 FNIP2Q9P278 1114 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 DPP7Q9UHL4 492 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 HOOK1Q9UJC3 728 aaKnown RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 BARX2Q9UMQ3 279 aaPredicted RBP13.56□□□□□ -0.24
SLIRP-209ENST00000557342 C2CD2Q9Y426 696 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 NUB1Q9Y5A7 615 aa13.56□□□□□ -0.24
SLIRP-209ENST00000557342 GRXCR2A6NFK2 248 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 KIF20AO95235 890 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 FGFR3P22607 806 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 PAX3P23760 479 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 FAM160A1Q05DH4 1040 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 SPAG1Q07617 926 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 DPYDQ12882 1025 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 KNOP1Q1ED39 458 aaKnown RBP13.55□□□□□ -0.24
SLIRP-209ENST00000557342 SPATA1Q5VX52 437 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 JADE1Q6IE81 842 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 ANKRD54Q6NXT1 300 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 NELFCDQ8IXH7 590 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 C3orf58Q8NDZ4 430 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 SLC22A17Q8WUG5 538 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 PIK3R5Q8WYR1 880 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 SAAL1Q96ER3 474 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 TIGD1Q96MW7 591 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 PCIF1Q9H4Z3 704 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 TUBGCP4Q9UGJ1 667 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 PRUNE2Q8WUY3 3088 aa13.55□□□□□ -0.24
SLIRP-209ENST00000557342 ZNF233A6NK53 670 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 SYN3O14994 580 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 TEX28O15482 410 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 TGFB1I1O43294 461 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 MBTPS2O43462 519 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 RHOBTB3O94955 611 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 GLUD1P00367 558 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 PRR29P0C7W0 189 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 MCM4P33991 863 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 HOXD13P35453 343 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 BRCC3P46736 316 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 CLCN4P51793 760 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 RBM10P98175 930 aaKnown RBP13.54□□□□□ -0.24
SLIRP-209ENST00000557342 STK4Q13043 487 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 KCNB1Q14721 858 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 SURF1Q15526 300 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 CLUL1Q15846 466 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 PSMD5Q16401 504 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 RTP2Q5QGT7 225 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 CD300LGQ6UXG3 332 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 ANKS3Q6ZW76 656 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 BRSK2Q8IWQ3 736 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 SMRP1Q8NCR6 262 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 ENGASEQ8NFI3 743 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 GOLGA5Q8TBA6 731 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 ADAMTS19Q8TE59 1207 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 NOC3LQ8WTT2 800 aaKnown RBP13.54□□□□□ -0.24
SLIRP-209ENST00000557342 CACTINQ8WUQ7 758 aaKnown RBP13.54□□□□□ -0.24
SLIRP-209ENST00000557342 B3GALT6Q96L58 329 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 AGPAT3Q9NRZ7 376 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 RBAKQ9NYW8 714 aaPredicted RBP13.54□□□□□ -0.24
SLIRP-209ENST00000557342 HSPBP1Q9NZL4 362 aa13.54□□□□□ -0.24
SLIRP-209ENST00000557342 SCN1AP35498 2009 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 GOLGA8IPA6NC78 632 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 SPDYE4A6NLX3 237 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 GOLGA8JA6NMD2 632 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 NFICP08651 508 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 IL9P15248 144 aa13.53□□□□□ -0.24
SLIRP-209ENST00000557342 EPCAMP16422 314 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms