RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ANKRD36BP1Q96IX9 119 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 MTMR12Q9C0I1 747 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 HSD3B7Q9H2F3 369 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 GOLGA2P5Q9HBQ8 144 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 DPP3Q9NY33 737 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 CACNG4Q9UBN1 327 aa13.24□□□□□ -0.29
SHMT2-209ENST00000553949 KCNJ18B7U540 433 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 STX10O60499 249 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 TNNC2P02585 160 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 ALDH2P05091 517 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 GALTP07902 379 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 TMEM191BP0C7N4 346 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 EEF1GP26641 437 aaKnown RBP13.23□□□□□ -0.29
SHMT2-209ENST00000553949 LRPAP1P30533 357 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 GTF2H1P32780 548 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 RPL9P32969 192 aaKnown RBP13.23□□□□□ -0.29
SHMT2-209ENST00000553949 SLC11A1P49279 550 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 ALDH7A1P49419 539 aaKnown RBP13.23□□□□□ -0.29
SHMT2-209ENST00000553949 CLCNKBP51801 687 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 BCAR1P56945 870 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 TAP1Q03518 808 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 PPP3CAQ08209 521 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 KCNJ12Q14500 433 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 UPP1Q16831 310 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 TCP11X2Q5H9J9 407 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 TCERG1LQ5VWI1 586 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 C1orf127Q8N9H9 656 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 RABGGTAQ92696 567 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 SLC35C1Q96A29 364 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 DDX27Q96GQ7 796 aaKnown RBP13.23□□□□□ -0.29
SHMT2-209ENST00000553949 UROC1Q96N76 676 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 ZNF558Q96NG5 402 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 PAAF1Q9BRP4 392 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 NKX2-4Q9H2Z4 354 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 AAASQ9NRG9 546 aa13.23□□□□□ -0.29
SHMT2-209ENST00000553949 PODXLO00592 558 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 NRP1O14786 923 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 C4BPAP04003 597 aaKnown RBP13.22□□□□□ -0.29
SHMT2-209ENST00000553949 ITGB3P05106 788 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 ZNF18P17022 549 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 DNAJB2P25686 324 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 PBX3P40426 434 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 MTIF2P46199 727 aaKnown RBP13.22□□□□□ -0.29
SHMT2-209ENST00000553949 OR1G1P47890 313 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 GCLMP48507 274 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 TDRD10Q5VZ19 366 aaKnown RBP13.22□□□□□ -0.29
SHMT2-209ENST00000553949 C9orf57Q5W0N0 161 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 PPP2R2DQ66LE6 453 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 DCLRE1AQ6PJP8 1040 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 KCNT2Q6UVM3 1135 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 C15orf39Q6ZRI6 1047 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 SV2AQ7L0J3 742 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 TRAPPC11Q7Z392 1133 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 COLGALT1Q8NBJ5 622 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 TIFAQ96CG3 184 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 MMRN2Q9H8L6 949 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 ITGA11Q9UKX5 1188 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 FAN1Q9Y2M0 1017 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 PRG3Q9Y2Y8 225 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-209ENST00000553949 RWDD3Q9Y3V2 267 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 PCDHB12Q9Y5F1 795 aa13.22□□□□□ -0.29
SHMT2-209ENST00000553949 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.22□□□□□ -0.29
SHMT2-209ENST00000553949 FNDC1Q4ZHG4 1894 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-209ENST00000553949 ANO9A1A5B4 782 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 CARNS1A5YM72 827 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 NT5C1B-RDH14C9J2C7 533 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 F8W810 466 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 PIRO00625 290 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 KRT19P08727 400 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 CDK11BP21127 795 aaKnown RBP13.21□□□□□ -0.29
SHMT2-209ENST00000553949 POLR2BP30876 1174 aaKnown RBP13.21□□□□□ -0.29
SHMT2-209ENST00000553949 BMPR1AP36894 532 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 RBP5P82980 135 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 BIRC3Q13489 604 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 ZACNQ401N2 412 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 KRT39Q6A163 491 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 SCARA3Q6AZY7 606 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 SPRED2Q7Z698 418 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 TMEM173Q86WV6 379 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-209ENST00000553949 SLC39A11Q8N1S5 342 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 RNF214Q8ND24 703 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 CXorf38Q8TB03 319 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 TGS1Q96RS0 853 aaKnown RBP13.21□□□□□ -0.29
SHMT2-209ENST00000553949 TUBGCP2Q9BSJ2 902 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 C17orf80Q9BSJ5 609 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 COLEC11Q9BWP8 271 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 SLC28A3Q9HAS3 691 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 TMEM8AQ9HCN3 771 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 MARCH5Q9NX47 278 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 SIX4Q9UIU6 781 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 AGAP1Q9UPQ3 857 aa13.21□□□□□ -0.29
SHMT2-209ENST00000553949 RALGAPA2Q2PPJ7 1873 aa13.21□□□□□ -0.3
SHMT2-209ENST00000553949 GOLGA6L19H0YKK7 550 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 TMEM189-UBE2V1I3L0A0 370 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 PPEF2O14830 753 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 PHACTR2O75167 634 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 B3GAT3O94766 335 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 KIF4AO95239 1232 aa13.2□□□□□ -0.3
SHMT2-209ENST00000553949 AFPP02771 609 aaKnown RBP13.2□□□□□ -0.3
SHMT2-209ENST00000553949 ITGB1P05556 798 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms