RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 NPTXRO95502 500 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 P4HBP07237 508 aaKnown RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 IFNAR1P17181 557 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 ARF4P18085 180 aaPredicted RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 HOXA9P31269 272 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 YWHABP31946 246 aaKnown RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 RPS9P46781 194 aaKnown RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 PTENP60484 403 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 MBTD1Q05BQ5 628 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 NCBP1Q09161 790 aaKnown RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 SPEM2Q0P670 501 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 MTAPQ13126 283 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 PPP2R5CQ13362 524 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 FZD5Q13467 585 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 PSMD5Q16401 504 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 XKR9Q5GH70 373 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 FAM171A1Q5VUB5 890 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 MOXD1Q6UVY6 613 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 CEP57Q86XR8 500 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 HACE1Q8IYU2 909 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 LNX1Q8TBB1 728 aaPredicted RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 SLC7A14Q8TBB6 771 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 PIK3R5Q8WYR1 880 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 CHAMP1Q96JM3 812 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 LXNQ9BS40 222 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 PLA2G2FQ9BZM2 168 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 SLKQ9H2G2 1235 aaPredicted RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 NCOA5Q9HCD5 579 aaKnown RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 XPNPEP1Q9NQW7 623 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 SH3GLB2Q9NR46 395 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 HEBP1Q9NRV9 189 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 DNMT3BQ9UBC3 853 aaKnown RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 PARP2Q9UGN5 583 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.65□□□□□ -0.54
VPS29-208ENST00000550267 MTCL1Q9Y4B5 1905 aaKnown RBP11.64□□□□□ -0.55
VPS29-208ENST00000550267 CASTOR2A6NHX0 329 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 SHISA7A6NL88 538 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 M0R2N6 131 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 KIF4AO95239 1232 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 CCT2P78371 535 aaKnown RBP11.64□□□□□ -0.55
VPS29-208ENST00000550267 CAPSQ13938 189 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 PCBP1Q15365 356 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS29-208ENST00000550267 INF2Q27J81 1249 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 PABPC1LQ4VXU2 614 aaKnown RBP11.64□□□□□ -0.55
VPS29-208ENST00000550267 PPM1JQ5JR12 505 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 ZNF852Q6ZMS4 543 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 C4orf19Q8IY42 314 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 BLIDQ8IZY5 108 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 ASAP3Q8TDY4 903 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 MCRS1Q96EZ8 462 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 DYDC2Q96IM9 177 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 JAKMIP1Q96N16 626 aaKnown RBP11.64□□□□□ -0.55
VPS29-208ENST00000550267 NELL2Q99435 816 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 TTPALQ9BTX7 342 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 RGL1Q9NZL6 768 aa11.64□□□□□ -0.55
VPS29-208ENST00000550267 TDRD15B5MCY1 1934 aaKnown RBP11.64□□□□□ -0.55
VPS29-208ENST00000550267 CEP250Q9BV73 2442 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 CFAP99D6REC4 459 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 SLC30A4O14863 429 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 ECI2O75521 394 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 TDGF1P13385 188 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 ADCY1Q08828 1119 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 TFDP1Q14186 410 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 CTTNQ14247 550 aaKnown RBP11.63□□□□□ -0.55
VPS29-208ENST00000550267 MXD4Q14582 209 aaPredicted RBP11.63□□□□□ -0.55
VPS29-208ENST00000550267 EPHA7Q15375 998 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 NPY5RQ15761 445 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 AXDND1Q5T1B0 1012 aaPredicted RBP11.63□□□□□ -0.55
VPS29-208ENST00000550267 SLC27A1Q6PCB7 646 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 OTUD6AQ7L8S5 288 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 FAM20AQ96MK3 541 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 FAM126AQ9BYI3 521 aaPredicted RBP11.63□□□□□ -0.55
VPS29-208ENST00000550267 KCNMB3Q9NPA1 279 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 RAB23Q9ULC3 237 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 KCNH3Q9ULD8 1083 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 NDRG2Q9UN36 371 aaKnown RBP11.63□□□□□ -0.55
VPS29-208ENST00000550267 MRPS17Q9Y2R5 130 aaKnown RBP11.63□□□□□ -0.55
VPS29-208ENST00000550267 MRPS23Q9Y3D9 190 aaKnown RBP11.63□□□□□ -0.55
VPS29-208ENST00000550267 CACNA1IQ9P0X4 2223 aa11.63□□□□□ -0.55
VPS29-208ENST00000550267 GPR179Q6PRD1 2367 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 CACNA1BQ00975 2339 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.62□□□□□ -0.55
VPS29-208ENST00000550267 F12P00748 615 aaPredicted RBP11.62□□□□□ -0.55
VPS29-208ENST00000550267 POU2F2P09086 479 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 PDIA3P30101 505 aaKnown RBP11.62□□□□□ -0.55
VPS29-208ENST00000550267 OR1D2P34982 312 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 CYP4A11Q02928 519 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 TUSC3Q13454 348 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 RAB33AQ14088 237 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 SLC5A9Q2M3M2 681 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 NCAPH2Q6IBW4 605 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 TANGO2Q6ICL3 276 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 BLOC1S2Q6QNY1 142 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 DAGLBQ8NCG7 672 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 NETO1Q8TDF5 533 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 FOXJ1Q92949 421 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 AGXT2Q9BYV1 514 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 CXCL16Q9H2A7 254 aa11.62□□□□□ -0.55
VPS29-208ENST00000550267 EPG5Q9HCE0 2579 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 A0A1B0GUA9 196 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms