RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CA14Q9ULX7 337 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 DNM3Q9UQ16 869 aa9.3□□□□□ -0.92
USP28-215ENST00000545608 TDRD15B5MCY1 1934 aaKnown RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 TRIOO75962 3097 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 SMIM28A0A1B0GU29 152 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 SFI1A8K8P3 1242 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 TMEM189-UBE2V1I3L0A0 370 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 I3L4J1 428 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 SMAPO00193 183 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 HIP1RO75146 1068 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 HNRNPA1P09651 372 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP28-215ENST00000545608 TKTP29401 623 aaKnown RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 OR1D2P34982 312 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 GRM5P41594 1212 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 OSTNP61366 133 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 USP46P62068 366 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 SOX4Q06945 474 aaPredicted RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 UPP1Q16831 310 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 PROX2Q3B8N5 592 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 C8orf34Q49A92 452 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 XKR4Q5GH76 650 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 AXDND1Q5T1B0 1012 aaPredicted RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 LIN9Q5TKA1 542 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 KRT79Q5XKE5 535 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 RINT1Q6NUQ1 792 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 PARM1Q6UWI2 310 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 ALKAL1Q6UXT8 129 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 C1orf186Q6ZWK4 172 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 FRMD5Q7Z6J6 570 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 ITFG1Q8TB96 612 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 FGF14Q92915 247 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 ZBTB45Q96K62 511 aaPredicted RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 ZMAT2Q96NC0 199 aaKnown RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 TARS2Q9BW92 718 aaKnown RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 TBC1D17Q9HA65 648 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.29□□□□□ -0.92
USP28-215ENST00000545608 ARHGAP28Q9P2N2 729 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 MTRRQ9UBK8 725 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 CDH7Q9ULB5 785 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 POLIQ9UNA4 740 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 NUMBLQ9Y6R0 609 aa9.29□□□□□ -0.92
USP28-215ENST00000545608 PTPRZ1P23471 2315 aaPredicted RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 PRR23AA6NEV1 266 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 ABLIM1O14639 778 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 SLC16A4O15374 487 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 MEFVO15553 781 aaPredicted RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 PROZP22891 400 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 HOXA9P31269 272 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 GPC5P78333 572 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 ANGPT1Q15389 498 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 ZNF568Q3ZCX4 644 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 PDXDC1Q6P996 788 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 DTHD1Q6ZMT9 781 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 APBB1IPQ7Z5R6 666 aaPredicted RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 SLC7A14Q8TBB6 771 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 FGF13Q92913 245 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 CCDC97Q96F63 343 aaPredicted RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 UROC1Q96N76 676 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 PNMA5Q96PV4 448 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 CCDC94Q9BW85 323 aaPredicted RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 MRPL4Q9BYD3 311 aaKnown RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 RAB34Q9BZG1 259 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 KMT5AQ9NQR1 393 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 SLC2A4RGQ9NR83 387 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 HCFC1R1Q9NWW0 138 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 DNMT3BQ9UBC3 853 aaKnown RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 BACE2Q9Y5Z0 518 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 CDY1Q9Y6F8 540 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 ZFP37Q9Y6Q3 630 aaPredicted RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 ZFHX2Q9C0A1 2572 aaPredicted RBP9.28□□□□□ -0.92
USP28-215ENST00000545608 PHLPP2Q6ZVD8 1323 aa9.28□□□□□ -0.92
USP28-215ENST00000545608 DOCK8Q8NF50 2099 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 LAD1O00515 517 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 TRAPPC3O43617 180 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 XYLBO75191 536 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 DCNP07585 359 aaKnown RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 MCF2P10911 925 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 NDUFV2P19404 249 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 PRPHP41219 470 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 YARSP54577 528 aaKnown RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 RAD51AP2Q09MP3 1159 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 DMP1Q13316 513 aaPredicted RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 ZRSR1Q15695 479 aaKnown RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 UVSSAQ2YD98 709 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 MCTP1Q6DN14 999 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 PHLDB3Q6NSJ2 640 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 MPZL3Q6UWV2 235 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 ANKS3Q6ZW76 656 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 NKD2Q969F2 451 aaPredicted RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 SNX27Q96L92 541 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 DRC1Q96MC2 740 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 ACAP3Q96P50 834 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 PLIN2Q99541 437 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 NTPCRQ9BSD7 190 aaKnown RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 TCHPQ9BT92 498 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 ARHGEF3Q9NR81 526 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 TOPORSQ9NS56 1045 aaPredicted RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 KIAA1468Q9P260 1216 aa9.27□□□□□ -0.93
USP28-215ENST00000545608 RBM19Q9Y4C8 960 aaKnown RBP9.27□□□□□ -0.93
USP28-215ENST00000545608 DOCK6Q96HP0 2047 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms