RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 RAB33AQ14088 237 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 ZNF174Q15697 407 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 RUBCNQ92622 972 aa17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 DNMT3BQ9UBC3 853 aaKnown RBP17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 RALYQ9UKM9 306 aaKnown RBP17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 MRPS23Q9Y3D9 190 aaKnown RBP17.27■□□□□ 0.36
CHMP4A-207ENST00000533523 ATRXP46100 2492 aa17.27■□□□□ 0.35
CHMP4A-207ENST00000533523 VPS37CA5D8V6 355 aaPredicted RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 TMEM189-UBE2V1I3L0A0 370 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 CD72P21854 359 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 TGM1P22735 817 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 IGFBP6P24592 240 aaPredicted RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 RPA1P27694 616 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 CLCNKBP51801 687 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 SLC44A4Q53GD3 710 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 ATF7IP2Q5U623 682 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 HAUS3Q68CZ6 603 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 MCTP1Q6DN14 999 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 RSPO2Q6UXX9 243 aaPredicted RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 TPRG1Q6ZUI0 275 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 APBB1IPQ7Z5R6 666 aaPredicted RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 DDX27Q96GQ7 796 aaKnown RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 UROC1Q96N76 676 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 PPP1R10Q96QC0 940 aaKnown RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 DDX23Q9BUQ8 820 aaKnown RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 POLD4Q9HCU8 107 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 LTB4R2Q9NPC1 389 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 KCNH3Q9ULD8 1083 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 MTMR6Q9Y217 621 aa17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 MTF2Q9Y483 593 aaPredicted RBP17.26■□□□□ 0.35
CHMP4A-207ENST00000533523 RALGAPA1Q6GYQ0 2036 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 COL4A2P08572 1712 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 FAM170BA6NMN3 283 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 RHOP08100 348 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 EFNA5P52803 228 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 CSTF1Q05048 431 aaKnown RBP17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 SLC5A9Q2M3M2 681 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 UVSSAQ2YD98 709 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 ANKS3Q6ZW76 656 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 C3orf58Q8NDZ4 430 aa17.25■□□□□ 0.35
CHMP4A-207ENST00000533523 LAD1O00515 517 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 PRRG1O14668 218 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 SPTLC1O15269 473 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 TRAPPC3O43617 180 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 LRG1P02750 347 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 PDIA4P13667 645 aaKnown RBP17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 CEBPBP17676 345 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 CCT6AP40227 531 aaKnown RBP17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 BRCC3P46736 316 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 ATXN1P54253 815 aaKnown RBP17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 YARSP54577 528 aaKnown RBP17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 ZNF568Q3ZCX4 644 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 RILPL1Q5EBL4 403 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 NT5DC1Q5TFE4 455 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 FOXD4L5Q5VV16 416 aaPredicted RBP17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 FOXD4L4Q8WXT5 416 aaPredicted RBP17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 KIFAP3Q92845 792 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 MCRS1Q96EZ8 462 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 RAB34Q9BZG1 259 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 BHMT2Q9H2M3 363 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 NCDNQ9UBB6 729 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 FBXO4Q9UKT5 387 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 ZDHHC9Q9Y397 364 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 STK24Q9Y6E0 443 aa17.24■□□□□ 0.35
CHMP4A-207ENST00000533523 PHLPP2Q6ZVD8 1323 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 NBEAQ8NFP9 2946 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 ZSCAN22P10073 491 aaPredicted RBP17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 TARSP26639 723 aaKnown RBP17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 MAGEA9P43362 315 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 FXR2P51116 673 aaKnown RBP eCLIP17.23■□□□□ 0.352e-8■■□□□ 13.1
CHMP4A-207ENST00000533523 ARPP19P56211 112 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 OSTNP61366 133 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 ROR1Q01973 937 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 UPP1Q16831 310 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 ZNF528Q3MIS6 628 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 CEP120Q8N960 986 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 CCDC94Q9BW85 323 aaPredicted RBP17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 OSBPL6Q9BZF3 934 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 TOPORSQ9NS56 1045 aaPredicted RBP17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 BACE2Q9Y5Z0 518 aa17.23■□□□□ 0.35
CHMP4A-207ENST00000533523 ANK1P16157 1881 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 PODXLO00592 558 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 ECI2O75521 394 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 ELF1P32519 619 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 SOX4Q06945 474 aaPredicted RBP17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 VARS2Q5ST30 1063 aaKnown RBP17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 ZBTB41Q5SVQ8 909 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 CD300LGQ6UXG3 332 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 RTL10Q7L3V2 364 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 ATRIPQ8WXE1 791 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 CORO1BQ9BR76 489 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 CDT1Q9H211 546 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 PARD6AQ9NPB6 346 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 GDE1Q9NZC3 331 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 PCDHGA2Q9Y5H1 932 aa17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 CNOT1A5YKK6 2376 aaKnown RBP17.22■□□□□ 0.35
CHMP4A-207ENST00000533523 AKAP13Q12802 2813 aa17.21■□□□□ 0.35
CHMP4A-207ENST00000533523 SMIM28A0A1B0GU29 152 aa17.21■□□□□ 0.35
CHMP4A-207ENST00000533523 CCDC169A6NNP5 214 aa17.21■□□□□ 0.35
CHMP4A-207ENST00000533523 K7ERI5 159 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms