RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 DLX2Q07687 328 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-208ENST00000532560 SNW1Q13573 536 aaKnown RBP16.34■□□□□ 0.21
CPSF1-208ENST00000532560 PUS10Q3MIT2 529 aaKnown RBP16.34■□□□□ 0.21
CPSF1-208ENST00000532560 KIAA1841Q6NSI8 718 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 CD300LGQ6UXG3 332 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 BRSK2Q8IWQ3 736 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 KIAA0895Q8NCT3 520 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 SAAL1Q96ER3 474 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 MSLNLQ96KJ4 702 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 EMILIN2Q9BXX0 1053 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 RXFP1Q9HBX9 757 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.34■□□□□ 0.21
CPSF1-208ENST00000532560 CLEC1BQ9P126 229 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 C2CD2Q9Y426 696 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 C2CD2LO14523 706 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 TGFB1I1O43294 461 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 TRAPPC3O43617 180 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 EXTL3O43909 919 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 RHOBTB3O94955 611 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 NFICP08651 508 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 CNPP09543 421 aaKnown RBP16.33■□□□□ 0.2
CPSF1-208ENST00000532560 KCNQ1P51787 676 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 CREMQ03060 361 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 SPAG1Q07617 926 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 STK4Q13043 487 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 TMEM132DQ14C87 1099 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 KNOP1Q1ED39 458 aaKnown RBP16.33■□□□□ 0.2
CPSF1-208ENST00000532560 FAM171A1Q5VUB5 890 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 JADE1Q6IE81 842 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-208ENST00000532560 PPFIBP1Q86W92 1011 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-208ENST00000532560 CCDC47Q96A33 483 aaKnown RBP16.33■□□□□ 0.2
CPSF1-208ENST00000532560 FAM212AQ96EL1 285 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 B3GALT6Q96L58 329 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 TIGD1Q96MW7 591 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 KLHL5Q96PQ7 755 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 FAM213AQ9BRX8 229 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 TTPALQ9BTX7 342 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 AGPAT3Q9NRZ7 376 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 CGNQ9P2M7 1197 aaKnown RBP16.33■□□□□ 0.2
CPSF1-208ENST00000532560 BARX2Q9UMQ3 279 aaPredicted RBP16.33■□□□□ 0.2
CPSF1-208ENST00000532560 HCFC2Q9Y5Z7 792 aa16.33■□□□□ 0.2
CPSF1-208ENST00000532560 VWA8A3KMH1 1905 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 ADH1AP07327 375 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 IGFBP6P24592 240 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-208ENST00000532560 RBM10P98175 930 aaKnown RBP16.32■□□□□ 0.2
CPSF1-208ENST00000532560 GSE1Q14687 1217 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 KCNB1Q14721 858 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 RTP2Q5QGT7 225 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 SPATA1Q5VX52 437 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 PDXDC1Q6P996 788 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 HS2ST1Q7LGA3 356 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 NT5DC4Q86YG4 428 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 NELFCDQ8IXH7 590 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 GPD1LQ8N335 351 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 SMRP1Q8NCR6 262 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 ZSWIM2Q8NEG5 633 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 BEST2Q8NFU1 509 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 RIN2Q8WYP3 895 aaPredicted RBP16.32■□□□□ 0.2
CPSF1-208ENST00000532560 PIK3R5Q8WYR1 880 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 CASP10Q92851 521 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 HSPBP1Q9NZL4 362 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 FNIP2Q9P278 1114 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 CD207Q9UJ71 328 aa16.32■□□□□ 0.2
CPSF1-208ENST00000532560 TEX28O15482 410 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 BMP1P13497 986 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 HOXB8P17481 243 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-208ENST00000532560 FGFR3P22607 806 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 SMAD4Q13485 552 aaKnown RBP16.31■□□□□ 0.2
CPSF1-208ENST00000532560 PTCRAQ6ISU1 281 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-208ENST00000532560 ANKRD54Q6NXT1 300 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 LLGL2Q6P1M3 1020 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 C12orf56Q8IXR9 622 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 GOLGA5Q8TBA6 731 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 SLC22A17Q8WUG5 538 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 FBXL18Q96ME1 805 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 PCIF1Q9H4Z3 704 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 KIAA1586Q9HCI6 787 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 DZANK1Q9NVP4 752 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 RBAKQ9NYW8 714 aaPredicted RBP16.31■□□□□ 0.2
CPSF1-208ENST00000532560 NUB1Q9Y5A7 615 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 XIRP2A4UGR9 3374 aa16.31■□□□□ 0.2
CPSF1-208ENST00000532560 GOLGA8IPA6NC78 632 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 GRXCR2A6NFK2 248 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 GOLGA8JA6NMD2 632 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 SYN3O14994 580 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 C1RP00736 705 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 KLRC2P26717 231 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 BRCC3P46736 316 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 CLCN4P51793 760 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 GUCY2FP51841 1108 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 WNT7BP56706 349 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 PNOCQ13519 176 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 CLUL1Q15846 466 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 PSMD5Q16401 504 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 EFCAB13Q8IY85 973 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 ELOA2Q8IYF1 753 aaPredicted RBP16.3■□□□□ 0.2
CPSF1-208ENST00000532560 TMEM130Q8N3G9 435 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 LNX1Q8TBB1 728 aaPredicted RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms