RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TIMM44	O43615	452 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	PRAMEF4	O60810	478 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	SMC2	O95347	1197 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	IVL	P07476	585 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	HNRNPH2	P55795	449 aa	Known RBP	6.35	□□□□□ -1.39
CD44-231	ENST00000531110	EVA1C	P58658	441 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	ADAM17	P78536	824 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	CDK17	Q00537	523 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	HHEX	Q03014	270 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	R3HDM1	Q15032	1099 aa	Known RBP	6.35	□□□□□ -1.39
CD44-231	ENST00000531110	PPP2R5A	Q15172	486 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	TTC19	Q6DKK2	380 aa	Predicted RBP	6.35	□□□□□ -1.39
CD44-231	ENST00000531110	PGM2L1	Q6PCE3	622 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110		Q6ZSN1	163 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	PDZD4	Q76G19	769 aa	Predicted RBP	6.35	□□□□□ -1.39
CD44-231	ENST00000531110	MORC1	Q86VD1	984 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	MIPOL1	Q8TD10	442 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	HOXB13	Q92826	284 aa	Predicted RBP	6.35	□□□□□ -1.39
CD44-231	ENST00000531110	KIF1BP	Q96EK5	621 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	BCO1	Q9HAY6	547 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	6.35	□□□□□ -1.39
CD44-231	ENST00000531110	CHMP5	Q9NZZ3	219 aa		6.35	□□□□□ -1.39
CD44-231	ENST00000531110	INSR	P06213	1382 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	CREB3	O43889	395 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	SH3BP5	O60239	455 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	RPS6KA5	O75582	802 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	PDGFRB	P09619	1106 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	MYBL2	P10244	700 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	RPL17	P18621	184 aa	Known RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	MSX2	P35548	267 aa	Predicted RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	GZMK	P49863	264 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	RPS6KA3	P51812	740 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	MRPL49	Q13405	166 aa	Known RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	ABCB5	Q2M3G0	1257 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	TMEM240	Q5SV17	173 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	ABHD15	Q6UXT9	468 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	DOK3	Q7L591	496 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	CCDC186	Q7Z3E2	898 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	SRL	Q86TD4	932 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	TEX11	Q8IYF3	940 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	GOLGA5	Q8TBA6	731 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	PIBF1	Q8WXW3	757 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	RIN2	Q8WYP3	895 aa	Predicted RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	MIEF2	Q96C03	454 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	IL17RA	Q96F46	866 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	C8orf49	Q96NF6	230 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	CRACR2A	Q9BSW2	395 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	ADI1	Q9BV57	179 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	KLC2	Q9H0B6	622 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	CCDC8	Q9H0W5	538 aa	Predicted RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	TLR9	Q9NR96	1032 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	GPRC5D	Q9NZD1	345 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	CPSF2	Q9P2I0	782 aa	Known RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	DKK3	Q9UBP4	350 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	BARX2	Q9UMQ3	279 aa	Predicted RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	TSC22D4	Q9Y3Q8	395 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	EIF4G1	Q04637	1599 aa	Known RBP	6.34	□□□□□ -1.39
CD44-231	ENST00000531110	ZMYM4	Q5VZL5	1548 aa		6.34	□□□□□ -1.39
CD44-231	ENST00000531110	KTN1	Q86UP2	1357 aa	Known RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	TNKS	O95271	1327 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	NPHP1	O15259	732 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	IPO13	O94829	963 aa	Known RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ENDOD1	O94919	500 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ADRB1	P08588	477 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	OSM	P13725	252 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ZNF20	P17024	532 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ECHS1	P30084	290 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	STIP1	P31948	543 aa	Known RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	NF2	P35240	595 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	PPP3CA	Q08209	521 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	DNAJC21	Q5F1R6	531 aa	Known RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	DCAF17	Q5H9S7	520 aa	Predicted RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	FKBP15	Q5T1M5	1219 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	HTR3D	Q70Z44	454 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	PRRT2	Q7Z6L0	340 aa	Predicted RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ANKRD18A	Q8IVF6	992 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	D2HGDH	Q8N465	521 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	LILRA3	Q8N6C8	439 aa	Predicted RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	OR7D4	Q8NG98	312 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	DNAAF4	Q8WXU2	420 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ARL8A	Q96BM9	186 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	CDK5RAP3	Q96JB5	506 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ZNF512	Q96ME7	567 aa	Predicted RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	PLEKHG4B	Q96PX9	1271 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	MAK16	Q9BXY0	300 aa	Known RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	RSPH9	Q9H1X1	276 aa	Predicted RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	RMI1	Q9H9A7	625 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	TCF7L1	Q9HCS4	588 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	GNL3L	Q9NVN8	582 aa	Known RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	HECA	Q9UBI9	543 aa	Predicted RBP	6.33	□□□□□ -1.4
CD44-231	ENST00000531110	POLK	Q9UBT6	870 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	TRPS1	Q9UHF7	1281 aa		6.33	□□□□□ -1.4
CD44-231	ENST00000531110	TNIK	Q9UKE5	1360 aa		6.32	□□□□□ -1.4
CD44-231	ENST00000531110	MUSK	O15146	869 aa		6.32	□□□□□ -1.4
CD44-231	ENST00000531110	HOXA3	O43365	443 aa	Predicted RBP	6.32	□□□□□ -1.4
CD44-231	ENST00000531110	AKR1B10	O60218	316 aa		6.32	□□□□□ -1.4
CD44-231	ENST00000531110	CAND2	O75155	1236 aa		6.32	□□□□□ -1.4
CD44-231	ENST00000531110	E2F6	O75461	281 aa		6.32	□□□□□ -1.4

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