RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ARIH2O95376 493 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 ITGB1P05556 798 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 ALAS1P13196 640 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 RNASE9P60153 205 aaKnown RBP5.61□□□□□ -1.51
CD44-215ENST00000525241 MINDY4Q4G0A6 757 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 AGAP9Q5VTM2 703 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 C14orf80Q86SX3 495 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 NLGN4YQ8NFZ3 816 aaPredicted RBP5.61□□□□□ -1.51
CD44-215ENST00000525241 PPP1R35Q8TAP8 253 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 CPT1CQ8TCG5 803 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 ZNF503Q96F45 646 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 PHACTR3Q96KR7 559 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 DCLRE1CQ96SD1 692 aaKnown RBP5.61□□□□□ -1.51
CD44-215ENST00000525241 TEX101Q9BY14 249 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 PARPBPQ9NWS1 579 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 CHPF2Q9P2E5 772 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 NR2E3Q9Y5X4 410 aa5.61□□□□□ -1.51
CD44-215ENST00000525241 DIRC3C9JPN6 131 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 CTNND1O60716 968 aaKnown RBP5.6□□□□□ -1.51
CD44-215ENST00000525241 SLC43A1O75387 559 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 INSRRP14616 1297 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 SMARCA1P28370 1054 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 PRDX5P30044 214 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 NKX6-1P78426 367 aaPredicted RBP5.6□□□□□ -1.51
CD44-215ENST00000525241 DGCR2P98153 550 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 FOXE3Q13461 319 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 MIIPQ5JXC2 388 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 GDF7Q7Z4P5 450 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 FAM90A1Q86YD7 464 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 DENND1CQ8IV53 801 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 RHOT2Q8IXI1 618 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 CAMKK1Q8N5S9 505 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 FITM2Q8N6M3 262 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 TTC8Q8TAM2 541 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 CACTINQ8WUQ7 758 aaKnown RBP5.6□□□□□ -1.51
CD44-215ENST00000525241 PLEKHG4BQ96PX9 1271 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 LRFN3Q9BTN0 628 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 ZNF768Q9H5H4 540 aaKnown RBP5.6□□□□□ -1.51
CD44-215ENST00000525241 LMBRD1Q9NUN5 540 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 SIDT1Q9NXL6 827 aaKnown RBP5.6□□□□□ -1.51
CD44-215ENST00000525241 TRPM5Q9NZQ8 1165 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 GABBR1Q9UBS5 961 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 ABCF2Q9UG63 623 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 MYRFQ9Y2G1 1151 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 STXBP5LQ9Y2K9 1186 aa5.6□□□□□ -1.51
CD44-215ENST00000525241 CDHR4A6H8M9 788 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 RECQL4O94761 1208 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 UBXN7O94888 489 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 HAUS5O94927 633 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 FTH1P19P0C7X4 201 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 MYBP10242 640 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 TYRP14679 529 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 NR4A1P22736 598 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 GCSHP23434 173 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 ZFP36P26651 326 aaKnown RBP5.59□□□□□ -1.51
CD44-215ENST00000525241 IL12RB1P42701 662 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 FAM189BP81408 668 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 PLS1Q14651 629 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 PDCD4Q53EL6 469 aaKnown RBP5.59□□□□□ -1.51
CD44-215ENST00000525241 TSHZ3Q63HK5 1081 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 OVCH2Q7RTZ1 564 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 WDR75Q8IWA0 830 aaKnown RBP5.59□□□□□ -1.51
CD44-215ENST00000525241 ZBTB34Q8NCN2 500 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 OR56A1Q8NGH5 318 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 PLBD2Q8NHP8 589 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 KLHDC4Q8TBB5 520 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 CDK5RAP3Q96JB5 506 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 FAM167AQ96KS9 214 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 WDCPQ9H6R7 721 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 KLHL11Q9NVR0 708 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 PNPOQ9NVS9 261 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 JKAMPQ9P055 326 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 SLC45A2Q9UMX9 530 aa5.59□□□□□ -1.51
CD44-215ENST00000525241 USP15Q9Y4E8 981 aaPredicted RBP5.59□□□□□ -1.51
CD44-215ENST00000525241 CCDC78A2IDD5 438 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 PRSS29PA6NIE9 313 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 ERC2O15083 957 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 MATN3O15232 486 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 B3GALT2O43825 422 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 RPS6KA4O75676 772 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 TUSC2O75896 110 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 CKBP12277 381 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 HTR1BP28222 390 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 NOMO3P69849 1222 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 ZXDCQ2QGD7 858 aaPredicted RBP5.58□□□□□ -1.52
CD44-215ENST00000525241 CCDC93Q567U6 631 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 NOMO2Q5JPE7 1267 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 UTP14CQ5TAP6 766 aaKnown RBP5.58□□□□□ -1.52
CD44-215ENST00000525241 ZNF365Q70YC5 407 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 ZNF276Q8N554 614 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 SH2D3CQ8N5H7 860 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 TBC1D15Q8TC07 691 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 FAM193BQ96PV7 902 aaPredicted RBP5.58□□□□□ -1.52
CD44-215ENST00000525241 C1orf43Q9BWL3 253 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 SLC46A2Q9BY10 475 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 PACSIN1Q9BY11 444 aa5.58□□□□□ -1.52
CD44-215ENST00000525241 MRPL46Q9H2W6 279 aaKnown RBP5.58□□□□□ -1.52
CD44-215ENST00000525241 A0A088AWK7 358 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 GOLGA6CA6NDK9 693 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 GOLGA6BA6NDN3 693 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms