RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GNA14O95837 355 aa32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 DCAF17Q5H9S7 520 aaPredicted RBP32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 KCNT2Q6UVM3 1135 aa32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 LRSAM1Q6UWE0 723 aa32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 TGS1Q96RS0 853 aaKnown RBP32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 THAP9Q9H5L6 903 aa32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 AAASQ9NRG9 546 aa32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 PRG3Q9Y2Y8 225 aaPredicted RBP32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 RWDD3Q9Y3V2 267 aa32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 GTF3C5Q9Y5Q8 519 aaPredicted RBP32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 PLXNA4Q9HCM2 1894 aa32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 COL4A4P53420 1690 aaPredicted RBP32.04■■■□□ 2.72
LIMCH1-211ENST00000509638 CYP3A5P20815 502 aa32.03■■■□□ 2.72
LIMCH1-211ENST00000509638 ALDH7A1P49419 539 aaKnown RBP32.03■■■□□ 2.72
LIMCH1-211ENST00000509638 HSP90AA4PQ58FG1 418 aa32.03■■■□□ 2.72
LIMCH1-211ENST00000509638 FRMD5Q7Z6J6 570 aa32.03■■■□□ 2.72
LIMCH1-211ENST00000509638 ANKRD36BP1Q96IX9 119 aa32.03■■■□□ 2.72
LIMCH1-211ENST00000509638 METTL14Q9HCE5 456 aaKnown RBP32.03■■■□□ 2.72
LIMCH1-211ENST00000509638 GALTP07902 379 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 CLCNKBP51801 687 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 CLDN10P78369 228 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 C1orf220Q5T0J3 134 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 IRF2BP1Q8IU81 584 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 CACTINQ8WUQ7 758 aaKnown RBP32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 UROC1Q96N76 676 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 SCN1AP35498 2009 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 NT5C1B-RDH14C9J2C7 533 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 TNNC2P02585 160 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 ENPEPQ07075 957 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 DUOXA2Q1HG44 320 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 TCERG1LQ5VWI1 586 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 TMEM173Q86WV6 379 aaPredicted RBP32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 SAMSN1Q9NSI8 373 aaKnown RBP32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 DPP3Q9NY33 737 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 PCDHB12Q9Y5F1 795 aa32.02■■■□□ 2.72
LIMCH1-211ENST00000509638 F8W810 466 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 PODXLO00592 558 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 NRP1O14786 923 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 MARSP56192 900 aaKnown RBP32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 ZNF445P59923 1031 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 UPP1Q16831 310 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 C1orf127Q8N9H9 656 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 TSPY26PQ9H489 355 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 FAN1Q9Y2M0 1017 aa32.01■■■□□ 2.71
LIMCH1-211ENST00000509638 KIF4AO95239 1232 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 LRPAP1P30533 357 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 BMPR1AP36894 532 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 ERVK-21P61565 698 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 NCAPHQ15003 741 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 EPC2Q52LR7 807 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 FAM114A1Q8IWE2 563 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 DHX40Q8IX18 779 aaKnown RBP32■■■□□ 2.71
LIMCH1-211ENST00000509638 ZNF516Q92618 1163 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 LRCH3Q96II8 777 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 SAMD11Q96NU1 681 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 CERS4Q9HA82 394 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 MARCH5Q9NX47 278 aa32■■■□□ 2.71
LIMCH1-211ENST00000509638 IKBKBO14920 756 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 CAVIN2O95810 425 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 ALDH2P05091 517 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 ITGB3P05106 788 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 PPM1AP35813 382 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 CREBRFQ8IUR6 639 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 SLC39A11Q8N1S5 342 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 HASPINQ8TF76 798 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 BCL7CQ8WUZ0 217 aaPredicted RBP31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 DDX27Q96GQ7 796 aaKnown RBP31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 MMRN2Q9H8L6 949 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 FANCLQ9NW38 375 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 ITGA11Q9UKX5 1188 aa31.99■■■□□ 2.71
LIMCH1-211ENST00000509638 CARNS1A5YM72 827 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 PPEF2O14830 753 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 RPL9P32969 192 aaKnown RBP31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 MCCD1P59942 119 aaPredicted RBP31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 PPP3CAQ08209 521 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 TRIM59Q8IWR1 403 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 C3orf58Q8NDZ4 430 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 SLC35C1Q96A29 364 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 CBX8Q9HC52 389 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 MAGEC2Q9UBF1 373 aaPredicted RBP31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 MYO9BQ13459 2157 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 ITGB1P05556 798 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 POLR2BP30876 1174 aaKnown RBP31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 GCLMP48507 274 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 AP3M2P53677 418 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 BIRC3Q13489 604 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 HABP4Q5JVS0 413 aaKnown RBP31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 CDKAL1Q5VV42 579 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 TDRD10Q5VZ19 366 aaKnown RBP31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 C9orf57Q5W0N0 161 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 TRAPPC11Q7Z392 1133 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 ARNTL2Q8WYA1 636 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 PLVAPQ9BX97 442 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 SPG21Q9NZD8 308 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 SIX4Q9UIU6 781 aa31.98■■■□□ 2.71
LIMCH1-211ENST00000509638 C5orf67F2Z3F1 127 aa31.97■■■□□ 2.71
LIMCH1-211ENST00000509638 B3GAT3O94766 335 aa31.97■■■□□ 2.71
LIMCH1-211ENST00000509638 IQCB1Q15051 598 aa31.97■■■□□ 2.71
LIMCH1-211ENST00000509638 KLHL23Q8NBE8 558 aa31.97■■■□□ 2.71
LIMCH1-211ENST00000509638 IGSF21Q96ID5 467 aa31.97■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms