RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 FAM161BQ96MY7 647 aa11.05□□□□□ -0.64
HDAC3-210ENST00000490808 NOX5Q96PH1 765 aa11.05□□□□□ -0.64
HDAC3-210ENST00000490808 CGRRF1Q99675 332 aa11.05□□□□□ -0.64
HDAC3-210ENST00000490808 CCDC113Q9H0I3 377 aa11.05□□□□□ -0.64
HDAC3-210ENST00000490808 FZD8Q9H461 694 aa11.05□□□□□ -0.64
HDAC3-210ENST00000490808 ADAMTS1Q9UHI8 967 aa11.05□□□□□ -0.64
HDAC3-210ENST00000490808 TNFSF13BQ9Y275 285 aa11.05□□□□□ -0.64
HDAC3-210ENST00000490808 TNNC2P02585 160 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 PLEKP08567 350 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 MCF2P10911 925 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 SELPP16109 830 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 ARHGAP25P42331 645 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 PIK3CAP42336 1068 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 CLCN3P51790 818 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 YWHAEP62258 255 aaKnown RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 CYP27A1Q02318 531 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 PTK2Q05397 1052 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 BIRC3Q13489 604 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 ARHGAP44Q17R89 818 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 PHLDB3Q6NSJ2 640 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 DPY19L2P1Q6NXN4 242 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 ALKBH5Q6P6C2 394 aaKnown RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 PSRC1Q6PGN9 363 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 SV2AQ7L0J3 742 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 WDR49Q8IV35 697 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 BRSK2Q8IWQ3 736 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 CD302Q8IX05 232 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 SLC35F6Q8N357 371 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 PPM1KQ8N3J5 372 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 TET1Q8NFU7 2136 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 LMO3Q8TAP4 145 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 NLRP7Q8WX94 980 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 ANKRD36BP1Q96IX9 119 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 GUCD1Q96NT3 240 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 GCOM2Q9BZD3 368 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 TRPV6Q9H1D0 765 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 MTIF3Q9H2K0 278 aaKnown RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 RPF1Q9H9Y2 349 aaKnown RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 PRDM5Q9NQX1 630 aaPredicted RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 TRMT13Q9NUP7 481 aaKnown RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 SETD4Q9NVD3 440 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 REXO2Q9Y3B8 237 aaKnown RBP11.04□□□□□ -0.64
HDAC3-210ENST00000490808 JRKLQ9Y4A0 524 aa11.04□□□□□ -0.64
HDAC3-210ENST00000490808 MYO9BQ13459 2157 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 CTIFO43310 598 aaKnown RBP11.03□□□□□ -0.64
HDAC3-210ENST00000490808 H2AFZP0C0S5 128 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 CYP2C9P11712 490 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 AXLP30530 894 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 ACOT2P49753 483 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 CHMP4BP1P59074 171 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 FPGSQ05932 587 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 GFPT1Q06210 699 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-210ENST00000490808 CKAP4Q07065 602 aaKnown RBP11.03□□□□□ -0.64
HDAC3-210ENST00000490808 TRPC3Q13507 836 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 ENOX2Q16206 610 aaKnown RBP11.03□□□□□ -0.64
HDAC3-210ENST00000490808 WHAMMP3Q1A5X7 153 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 DUOXA2Q1HG44 320 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 ZNF568Q3ZCX4 644 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 ZACNQ401N2 412 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 FAM26DQ5JW98 314 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 C1orf220Q5T0J3 134 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 H2AFVQ71UI9 128 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 MTERF4Q7Z6M4 381 aaKnown RBP11.03□□□□□ -0.64
HDAC3-210ENST00000490808 ZNF677Q86XU0 584 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 SYCE1Q8N0S2 351 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 LINC01465Q8N7H1 131 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 TRAPPC12Q8WVT3 735 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 FAXDC2Q96IV6 333 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 RPGRIP1Q96KN7 1286 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 WDR24Q96S15 920 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 RNF216Q9NWF9 866 aaPredicted RBP11.03□□□□□ -0.64
HDAC3-210ENST00000490808 CDC23Q9UJX2 597 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 NAGPAQ9UK23 515 aa11.03□□□□□ -0.64
HDAC3-210ENST00000490808 A0A0A6YYK5 440 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-210ENST00000490808 TRIM43BA6NCK2 446 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 EFCAB8A8MWE9 144 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 TREHO43280 583 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 CLSTN1O94985 981 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 CLTAP09496 248 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 TMEM191BP0C7N4 346 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 HARSP12081 509 aaKnown RBP11.02□□□□□ -0.65
HDAC3-210ENST00000490808 CKBP12277 381 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 PRLRP16471 622 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 USP8P40818 1118 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 PDE6CP51160 858 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 NLRP11P59045 1033 aaKnown RBP11.02□□□□□ -0.65
HDAC3-210ENST00000490808 MBTD1Q05BQ5 628 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 MKRN4PQ13434 485 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-210ENST00000490808 DRP2Q13474 957 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 SGSM1Q2NKQ1 1148 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 TRIM71Q2Q1W2 868 aaKnown RBP11.02□□□□□ -0.65
HDAC3-210ENST00000490808 DCAF4L1Q3SXM0 396 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 MARCH8Q5T0T0 291 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 FAM109BQ6ICB4 259 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-210ENST00000490808 C15orf39Q6ZRI6 1047 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 LRRC8DQ7L1W4 858 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 ZNF571Q7Z3V5 609 aaPredicted RBP11.02□□□□□ -0.65
HDAC3-210ENST00000490808 ZBTB33Q86T24 672 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 NT5DC4Q86YG4 428 aa11.02□□□□□ -0.65
HDAC3-210ENST00000490808 UBXN4Q92575 508 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms