RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TFAMQ00059 246 aaKnown RBP16.42■□□□□ 0.22
NPHP4-205ENST00000466897 SOX4Q06945 474 aaPredicted RBP16.42■□□□□ 0.22
NPHP4-205ENST00000466897 MAN2A1Q16706 1144 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 ZACNQ401N2 412 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 PAN2Q504Q3 1202 aaKnown RBP16.42■□□□□ 0.22
NPHP4-205ENST00000466897 LUZP1Q86V48 1076 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 ZNF280BQ86YH2 543 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 C18orf25Q96B23 403 aaPredicted RBP16.42■□□□□ 0.22
NPHP4-205ENST00000466897 PBX4Q9BYU1 374 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 MTMR12Q9C0I1 747 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 TMEM8AQ9HCN3 771 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 TUBGCP4Q9UGJ1 667 aa16.42■□□□□ 0.22
NPHP4-205ENST00000466897 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.42■□□□□ 0.22
NPHP4-205ENST00000466897 ANO9A1A5B4 782 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 LRRC10BA6NIK2 292 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 GRXCR1A8MXD5 290 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 P4HA2O15460 535 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 B4GALT3O60512 393 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 N4BP1O75113 896 aaKnown RBP16.41■□□□□ 0.22
NPHP4-205ENST00000466897 SLC34A2O95436 690 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 C4BPAP04003 597 aaKnown RBP16.41■□□□□ 0.22
NPHP4-205ENST00000466897 TRIM49P0CI25 452 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 TRIM49CP0CI26 452 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 RABGGTBP53611 331 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 UPP1Q16831 310 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 DCAF17Q5H9S7 520 aaPredicted RBP16.41■□□□□ 0.22
NPHP4-205ENST00000466897 C1orf127Q8N9H9 656 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 ANKRD20A12PQ8NF67 263 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 OR5B17Q8NGF7 314 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 CXorf38Q8TB03 319 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 ZNF516Q92618 1163 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 SAMD11Q96NU1 681 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 POP1Q99575 1024 aaKnown RBP16.41■□□□□ 0.22
NPHP4-205ENST00000466897 AAASQ9NRG9 546 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 DPP3Q9NY33 737 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 LIMA1Q9UHB6 759 aaKnown RBP16.41■□□□□ 0.22
NPHP4-205ENST00000466897 MSRAQ9UJ68 235 aa16.41■□□□□ 0.22
NPHP4-205ENST00000466897 TSC2P49815 1807 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 LCHNA4D1U4 455 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 LINC01553A4QN01 128 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 GOLGA6L19H0YKK7 550 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 PIRO00625 290 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 STAU1O95793 577 aaKnown RBP16.4■□□□□ 0.22
NPHP4-205ENST00000466897 GALTP07902 379 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 PPM1AP35813 382 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 MTIF2P46199 727 aaKnown RBP16.4■□□□□ 0.22
NPHP4-205ENST00000466897 BCAR1P56945 870 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 PPP3CAQ08209 521 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 TCERG1LQ5VWI1 586 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 TDRD10Q5VZ19 366 aaKnown RBP16.4■□□□□ 0.22
NPHP4-205ENST00000466897 KRT39Q6A163 491 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 SV2AQ7L0J3 742 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 TRAPPC11Q7Z392 1133 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 LRRC52Q8N7C0 313 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 TUBGCP2Q9BSJ2 902 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 PLVAPQ9BX97 442 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 DNAJB4Q9UDY4 337 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 COQ4Q9Y3A0 265 aa16.4■□□□□ 0.22
NPHP4-205ENST00000466897 GTPBP10A4D1E9 387 aaKnown RBP16.39■□□□□ 0.21
NPHP4-205ENST00000466897 C5orf67F2Z3F1 127 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 ZC3H11AO75152 810 aaKnown RBP eCLIP16.39■□□□□ 0.21
NPHP4-205ENST00000466897 AFPP02771 609 aaKnown RBP16.39■□□□□ 0.21
NPHP4-205ENST00000466897 ALDH2P05091 517 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 CA3P07451 260 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 PNPLA4P41247 253 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 FMO5P49326 533 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 ALDH7A1P49419 539 aaKnown RBP16.39■□□□□ 0.21
NPHP4-205ENST00000466897 MXI1P50539 228 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 CLCNKBP51801 687 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 KCNH2Q12809 1159 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 KRT31Q15323 416 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 MIIPQ5JXC2 388 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 C9orf57Q5W0N0 161 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 LMBRD2Q68DH5 695 aaPredicted RBP16.39■□□□□ 0.21
NPHP4-205ENST00000466897 DCLRE1AQ6PJP8 1040 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 KCNT2Q6UVM3 1135 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 COLGALT1Q8NBJ5 622 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 ZNF560Q96MR9 790 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 ZNF558Q96NG5 402 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 VRTNQ9H8Y1 702 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 GOLGA2P5Q9HBQ8 144 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 HCSTQ9UBK5 93 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 STK39Q9UEW8 545 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 SIX4Q9UIU6 781 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 YBX2Q9Y2T7 364 aaKnown RBP16.39■□□□□ 0.21
NPHP4-205ENST00000466897 VWA8A3KMH1 1905 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 LAMA3Q16787 3333 aa16.39■□□□□ 0.21
NPHP4-205ENST00000466897 COL4A4P53420 1690 aaPredicted RBP16.38■□□□□ 0.21
NPHP4-205ENST00000466897 TMEM265A0A087WTH1 108 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 CASTOR2A6NHX0 329 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 PODXLO00592 558 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 NRP1O14786 923 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 ITGB3P05106 788 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 RB1P06400 928 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 TPM2P07951 284 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 MYOGP15173 224 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 DNAJB2P25686 324 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 ATICP31939 592 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 GCLMP48507 274 aa16.38■□□□□ 0.21
NPHP4-205ENST00000466897 SLC11A1P49279 550 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms