RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SIDT1Q9NXL6 827 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 GAGE12BA1L429 117 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 GAGE12HA6NDE8 117 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 LRRC14BA6NHZ5 514 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 NT5C1B-RDH14C9J2C7 533 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC43A1O75387 559 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 HAUS5O94927 633 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 FTLP02792 175 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 CD1AP06126 327 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 SBK3P0C264 359 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 SPATA31D3P0C874 917 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC6A4P31645 630 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 IL12RB1P42701 662 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 MAP2K6P52564 334 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 DGCR2P98153 550 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 TUBA3CQ13748 450 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 ZNF267Q14586 743 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 TUBA3EQ6PEY2 450 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC4A10Q6U841 1118 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 SPATA31D4Q6ZUB0 917 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 GGNQ86UU5 652 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 GRAMD1CQ8IYS0 662 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 ZNF276Q8N554 614 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 FITM2Q8N6M3 262 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC25A43Q8WUT9 341 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 FAM167AQ96KS9 214 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 FAM193BQ96PV7 902 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 REXO4Q9GZR2 422 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 VPS11Q9H270 941 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 ANLNQ9NQW6 1124 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 TRPM5Q9NZQ8 1165 aa7.29□□□□□ -1.24
CCDC88A-206ENST00000430086 F2RL2O00254 374 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 ZNF185O15231 689 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 ITGB1P05556 798 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC6A2P23975 617 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 SMARCA1P28370 1054 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 PDCD4Q53EL6 469 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 CRIP3Q6Q6R5 217 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 MAGEB6Q8N7X4 407 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 CLIP3Q96DZ5 547 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 PHACTR3Q96KR7 559 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 TAAR9Q96RI9 348 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 KLHL11Q9NVR0 708 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 JKAMPQ9P055 326 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 NOB1Q9ULX3 412 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 ATP11BQ9Y2G3 1177 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 USP15Q9Y4E8 981 aaPredicted RBP7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 PCDHA3Q9Y5H8 950 aa7.28□□□□□ -1.24
CCDC88A-206ENST00000430086 RNASET2O00584 256 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 PPFIA4O75335 1185 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 RPS6KA4O75676 772 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 CKBP12277 381 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 NR4A1P22736 598 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 LSM12Q3MHD2 195 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 FLYWCH1Q4VC44 716 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 HEATR3Q7Z4Q2 680 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 OR56A1Q8NGH5 318 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 NUP133Q8WUM0 1156 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 LRGUKQ96M69 825 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 PACSIN1Q9BY11 444 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 ZNF768Q9H5H4 540 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 WDCPQ9H6R7 721 aa7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 GNL3LQ9NVN8 582 aaKnown RBP7.27□□□□□ -1.25
CCDC88A-206ENST00000430086 CDHR4A6H8M9 788 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 H3BML4 177 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 PRPF3O43395 683 aaKnown RBP7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 PRSS23O95084 383 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 ALDH2P05091 517 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 PRDX5P30044 214 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 FAM189BP81408 668 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 MINDY4Q4G0A6 757 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 FNDC7Q5VTL7 733 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 TSHZ3Q63HK5 1081 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 ZNF365Q70YC5 407 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 FAM90A1Q86YD7 464 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 LENG9Q96B70 501 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 CDK5RAP3Q96JB5 506 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 CGRRF1Q99675 332 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 TEX101Q9BY14 249 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 AKIP1Q9NQ31 210 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 LMBRD1Q9NUN5 540 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 GPRC5BQ9NZH0 403 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 FZD1Q9UP38 647 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 FPGT-TNNI3KV9GXZ4 949 aa7.26□□□□□ -1.25
CCDC88A-206ENST00000430086 MARCH11A6NNE9 402 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 ANXA1P04083 346 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 TYRP14679 529 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 ZFP36P26651 326 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 PTGS2P35354 604 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 NKX6-1P78426 367 aaPredicted RBP7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 MLC1Q15049 377 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 LRRC55Q6ZSA7 311 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 RHOUQ7L0Q8 258 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 DENND1CQ8IV53 801 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 MYO1HQ8N1T3 1032 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 TBC1D15Q8TC07 691 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 RUNDC1Q96C34 613 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 MYEOVQ96EZ4 313 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 ACO2Q99798 780 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 RNPEPQ9H4A4 650 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms