RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SPOUT1Q5T280 376 aaKnown RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 USP37Q86T82 979 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 TMEM130Q8N3G9 435 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 COLGALT1Q8NBJ5 622 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 BEST2Q8NFU1 509 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 OR5B17Q8NGF7 314 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 CNOT6LQ96LI5 555 aaKnown RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 FAM161BQ96MY7 647 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 UROC1Q96N76 676 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 POP1Q99575 1024 aaKnown RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 MTMR12Q9C0I1 747 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 METTL14Q9HCE5 456 aaKnown RBP18.39■□□□□ 0.53
COL7A1-202ENST00000422991 CACNG4Q9UBN1 327 aa18.39■□□□□ 0.53
COL7A1-202ENST00000422991 PLXNA4Q9HCM2 1894 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 CAVIN2O95810 425 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 TMEM191BP0C7N4 346 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 TRIM49P0CI25 452 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 TRIM49CP0CI26 452 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 TNNI1P19237 187 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 LRPAP1P30533 357 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 PBX3P40426 434 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 BCAR1P56945 870 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 PPP2R2DQ66LE6 453 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 KCNT2Q6UVM3 1135 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 SPRED2Q7Z698 418 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 DHX40Q8IX18 779 aaKnown RBP18.38■□□□□ 0.53
COL7A1-202ENST00000422991 CACTINQ8WUQ7 758 aaKnown RBP18.38■□□□□ 0.53
COL7A1-202ENST00000422991 TIFAQ96CG3 184 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 ZNF558Q96NG5 402 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 GUCD1Q96NT3 240 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 PAAF1Q9BRP4 392 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 TTYH1Q9H313 450 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-202ENST00000422991 TSPY26PQ9H489 355 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 AAASQ9NRG9 546 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 RWDD3Q9Y3V2 267 aa18.38■□□□□ 0.53
COL7A1-202ENST00000422991 CARNS1A5YM72 827 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 GALTP07902 379 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 CTNNB1P35222 781 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 ERVK-21P61565 698 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 IQCB1Q15051 598 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 DUOXA2Q1HG44 320 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 CDKAL1Q5VV42 579 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 FAM114A1Q8IWE2 563 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 TRIM59Q8IWR1 403 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 C1orf127Q8N9H9 656 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 ZNF516Q92618 1163 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 SLC35C1Q96A29 364 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 ANKRD36BP1Q96IX9 119 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 SAMD11Q96NU1 681 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 TGS1Q96RS0 853 aaKnown RBP18.37■□□□□ 0.53
COL7A1-202ENST00000422991 C17orf80Q9BSJ5 609 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 SLC28A3Q9HAS3 691 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 CBX8Q9HC52 389 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 SAMSN1Q9NSI8 373 aaKnown RBP18.37■□□□□ 0.53
COL7A1-202ENST00000422991 DPP3Q9NY33 737 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 PRG3Q9Y2Y8 225 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-202ENST00000422991 CDH23Q9H251 3354 aa18.37■□□□□ 0.53
COL7A1-202ENST00000422991 PODXLO00592 558 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 NRP1O14786 923 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 TNNC2P02585 160 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 RPL9P32969 192 aaKnown RBP18.36■□□□□ 0.53
COL7A1-202ENST00000422991 BMPR1AP36894 532 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 OR1G1P47890 313 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 ALDH7A1P49419 539 aaKnown RBP18.36■□□□□ 0.53
COL7A1-202ENST00000422991 CLCNKBP51801 687 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 AP3M2P53677 418 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 UPP1Q16831 310 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 DCAF17Q5H9S7 520 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-202ENST00000422991 TMEM173Q86WV6 379 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-202ENST00000422991 SLC39A11Q8N1S5 342 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 CXorf38Q8TB03 319 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 BCL7CQ8WUZ0 217 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-202ENST00000422991 RABGGTAQ92696 567 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 DDX27Q96GQ7 796 aaKnown RBP18.36■□□□□ 0.53
COL7A1-202ENST00000422991 HSD3B7Q9H2F3 369 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 FANCLQ9NW38 375 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 MARCH5Q9NX47 278 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 SIX4Q9UIU6 781 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 ITGA11Q9UKX5 1188 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 PCDHB12Q9Y5F1 795 aa18.36■□□□□ 0.53
COL7A1-202ENST00000422991 SCN1AP35498 2009 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 ANO9A1A5B4 782 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 C5orf67F2Z3F1 127 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 F8W810 466 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 TMEM189-UBE2V1I3L0A0 370 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 PPEF2O14830 753 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 STX10O60499 249 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 KIF4AO95239 1232 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 ALDH2P05091 517 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 ZNF18P17022 549 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 GTF2H1P32780 548 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 PPM1AP35813 382 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 PPP3CAQ08209 521 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 EPC2Q52LR7 807 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 HSP90AA4PQ58FG1 418 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 TCERG1LQ5VWI1 586 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 TDRD10Q5VZ19 366 aaKnown RBP18.35■□□□□ 0.53
COL7A1-202ENST00000422991 C9orf57Q5W0N0 161 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 C15orf39Q6ZRI6 1047 aa18.35■□□□□ 0.53
COL7A1-202ENST00000422991 TRAPPC11Q7Z392 1133 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms