RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 UNC80Q8N2C7 3258 aa23.58■■□□□ 1.37
CLN3-207ENST00000395653 PER2O15055 1255 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 KIF20AO95235 890 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 LRPAP1P30533 357 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 ADAM15Q13444 863 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 KIAA0319Q5VV43 1072 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 C3orf58Q8NDZ4 430 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 GOLGA5Q8TBA6 731 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 KIAA1586Q9HCI6 787 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 RMND1Q9NWS8 449 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 RBAKQ9NYW8 714 aaPredicted RBP23.58■■□□□ 1.36
CLN3-207ENST00000395653 HSPBP1Q9NZL4 362 aa23.58■■□□□ 1.36
CLN3-207ENST00000395653 TMEM132DQ14C87 1099 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 AAK1Q2M2I8 961 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 SPATA1Q5VX52 437 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 KIAA1841Q6NSI8 718 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 CD300LGQ6UXG3 332 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 NT5DC4Q86YG4 428 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 C12orf56Q8IXR9 622 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 BEST2Q8NFU1 509 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 EMILIN2Q9BXX0 1053 aa23.57■■□□□ 1.36
CLN3-207ENST00000395653 BRWD1Q9NSI6 2320 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 GOLGA8IPA6NC78 632 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 GOLGA8JA6NMD2 632 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 LINC01565O15544 149 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 TRAPPC3O43617 180 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 SMC2O95347 1197 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 NFICP08651 508 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 LTBRP36941 435 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 KCNC3Q14003 757 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 FAM171A1Q5VUB5 890 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 SPATA20Q8TB22 786 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 FBXL18Q96ME1 805 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 GSDMAQ96QA5 445 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 ANK1P16157 1881 aa23.56■■□□□ 1.36
CLN3-207ENST00000395653 CLIC2O15247 247 aa23.55■■□□□ 1.36
CLN3-207ENST00000395653 PRPF40AO75400 957 aaKnown RBP23.55■■□□□ 1.36
CLN3-207ENST00000395653 KCNA5P22460 613 aa23.55■■□□□ 1.36
CLN3-207ENST00000395653 MRPS5P82675 430 aaKnown RBP23.55■■□□□ 1.36
CLN3-207ENST00000395653 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.55■■□□□ 1.36
CLN3-207ENST00000395653 NOC3LQ8WTT2 800 aaKnown RBP23.55■■□□□ 1.36
CLN3-207ENST00000395653 TTPALQ9BTX7 342 aa23.55■■□□□ 1.36
CLN3-207ENST00000395653 KCTD10Q9H3F6 313 aa23.55■■□□□ 1.36
CLN3-207ENST00000395653 RXFP1Q9HBX9 757 aa23.55■■□□□ 1.36
CLN3-207ENST00000395653 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.55■■□□□ 1.36
CLN3-207ENST00000395653 ZNF233A6NK53 670 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 PDXKO00764 312 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 C2CD2LO14523 706 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 CLASP2O75122 1294 aaKnown RBP23.54■■□□□ 1.36
CLN3-207ENST00000395653 TBX10O75333 385 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 GLP2RO95838 553 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 SRGAP2BP0DMP2 458 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 IGFBP6P24592 240 aaPredicted RBP23.54■■□□□ 1.36
CLN3-207ENST00000395653 TFF2Q03403 129 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 RTP2Q5QGT7 225 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 TMEM184AQ6ZMB5 413 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 EP400NLQ6ZTU2 488 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 EFCAB13Q8IY85 973 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 GUF1Q8N442 669 aaKnown RBP23.54■■□□□ 1.36
CLN3-207ENST00000395653 XXYLT1Q8NBI6 393 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 VN1R2Q8NFZ6 395 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 TMEM174Q8WUU8 243 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 SMARCE1Q969G3 411 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 B3GALT6Q96L58 329 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 KLHL5Q96PQ7 755 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 NUB1Q9Y5A7 615 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 PCDHA5Q9Y5H7 936 aa23.54■■□□□ 1.36
CLN3-207ENST00000395653 CNPP09543 421 aaKnown RBP23.53■■□□□ 1.36
CLN3-207ENST00000395653 FGFR3P22607 806 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 BRCC3P46736 316 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 NDUFV1P49821 464 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 CYP2J2P51589 502 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 WNT7BP56706 349 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 CREMQ03060 361 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 DLX2Q07687 328 aaPredicted RBP23.53■■□□□ 1.36
CLN3-207ENST00000395653 LEXMQ3ZCV2 418 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 PDXDC1Q6P996 788 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 PPFIBP1Q86W92 1011 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 CBWD2Q8IUF1 395 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 RIN2Q8WYP3 895 aaPredicted RBP23.53■■□□□ 1.36
CLN3-207ENST00000395653 PIK3R5Q8WYR1 880 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 HCFC2Q9Y5Z7 792 aa23.53■■□□□ 1.36
CLN3-207ENST00000395653 GUCY2FP51841 1108 aa23.52■■□□□ 1.36
CLN3-207ENST00000395653 SURF1Q15526 300 aa23.52■■□□□ 1.36
CLN3-207ENST00000395653 SNRNP35Q16560 246 aaKnown RBP23.52■■□□□ 1.36
CLN3-207ENST00000395653 CEP57Q86XR8 500 aa23.52■■□□□ 1.36
CLN3-207ENST00000395653 SLC9A9Q8IVB4 645 aa23.52■■□□□ 1.36
CLN3-207ENST00000395653 ASB2Q96Q27 587 aa23.52■■□□□ 1.36
CLN3-207ENST00000395653 GTPBP4Q9BZE4 634 aaKnown RBP23.52■■□□□ 1.36
CLN3-207ENST00000395653 CLEC1BQ9P126 229 aa23.52■■□□□ 1.36
CLN3-207ENST00000395653 FNIP2Q9P278 1114 aa23.52■■□□□ 1.36
CLN3-207ENST00000395653 H3BQ06 376 aaPredicted RBP23.51■■□□□ 1.35
CLN3-207ENST00000395653 ADH1AP07327 375 aa23.51■■□□□ 1.35
CLN3-207ENST00000395653 PAX3P23760 479 aa23.51■■□□□ 1.35
CLN3-207ENST00000395653 TMEM130Q8N3G9 435 aa23.51■■□□□ 1.35
CLN3-207ENST00000395653 CASP10Q92851 521 aa23.51■■□□□ 1.35
CLN3-207ENST00000395653 ERCC4Q92889 916 aaPredicted RBP23.51■■□□□ 1.35
CLN3-207ENST00000395653 SUSD3Q96L08 255 aa23.51■■□□□ 1.35
CLN3-207ENST00000395653 GBP4Q96PP9 640 aa23.51■■□□□ 1.35
CLN3-207ENST00000395653 DPP3Q9NY33 737 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms