RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 RAB27AP51159 221 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 COPS2P61201 443 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 OSTNP61366 133 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 TNFAIP2Q03169 654 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 GRIK3Q13003 919 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 MXD4Q14582 209 aaPredicted RBP6.04□□□□□ -1.44
RFFL-202ENST00000394597 EMC2Q15006 297 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 MFSD14CQ5VZR4 134 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 ARHGEF18Q6ZSZ5 1173 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 VSIG10LQ86VR7 867 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 RIOX2Q8IUF8 465 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 THNSL1Q8IYQ7 743 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 GPD1LQ8N335 351 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 PRPF31Q8WWY3 499 aaKnown RBP6.04□□□□□ -1.44
RFFL-202ENST00000394597 CLMNQ96JQ2 1002 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 PPP1R16BQ96T49 567 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 PRMT1Q99873 361 aaKnown RBP6.04□□□□□ -1.44
RFFL-202ENST00000394597 FAM49AQ9H0Q0 323 aaPredicted RBP6.04□□□□□ -1.44
RFFL-202ENST00000394597 SEMA6BQ9H3T3 888 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 ADAMTS1Q9UHI8 967 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 GGA2Q9UJY4 613 aa6.04□□□□□ -1.44
RFFL-202ENST00000394597 DBR1Q9UK59 544 aaKnown RBP6.04□□□□□ -1.44
RFFL-202ENST00000394597 PDHXO00330 501 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 LGR5O75473 907 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 PSMD10O75832 226 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 UBOX5O94941 541 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 UPP2O95045 317 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ECEL1O95672 775 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 OATP04181 439 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 FESP07332 822 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 SUPT20HL2P0C7V6 817 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 HOXD10P28358 340 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 CLUL1Q15846 466 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 CDKAL1Q5VV42 579 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 TSEN2Q8NCE0 465 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 LRRC37BQ96QE4 947 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 MKNK1Q9BUB5 465 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 CYP26B1Q9NR63 512 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 HSPBP1Q9NZL4 362 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 SUCLA2Q9P2R7 463 aaPredicted RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 AGO2Q9UKV8 859 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 ARL2BPQ9Y2Y0 163 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 THSD7AQ9UPZ6 1657 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 A0A0U1RQJ8 604 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 TLR3O15455 904 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 MAGEB2O15479 319 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ASAP2O43150 1006 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 DYNC1LI2O43237 492 aaPredicted RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 HBP1O60381 514 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 TCF7P36402 384 aaPredicted RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 TMED10P49755 219 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 CLK2P49760 499 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 DGKZQ13574 1117 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 RRP1BQ14684 758 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 TMEM132BQ14DG7 1078 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 PPP2R5EQ16537 467 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 IER5Q5VY09 327 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 KRT39Q6A163 491 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ALKBH5Q6P6C2 394 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 LRIG3Q6UXM1 1119 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 PPP1R21Q6ZMI0 780 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 CCDC80Q76M96 950 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 CATSPER4Q7RTX7 472 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 PLEKHH3Q7Z736 793 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 DRAXINQ8NBI3 349 aaPredicted RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 DTX3LQ8TDB6 740 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 AENQ8WTP8 325 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 HDAC7Q8WUI4 952 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 PRCCQ92733 491 aaPredicted RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 MS4A14Q96JA4 679 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 RMDN2Q96LZ7 410 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 RUNDC3BQ96NL0 473 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 GALNT8Q9NY28 637 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 EHD2Q9NZN4 543 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 PDP2Q9P2J9 529 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 UBIAD1Q9Y5Z9 338 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 MYH2Q9UKX2 1941 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 SHANK3Q9BYB0 1731 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 TCP11X1B4DZS4 312 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 STRNO43815 780 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ZCCHC18P0CG32 403 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 TRIM49P0CI25 452 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 TRIM49CP0CI26 452 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ZNF18P17022 549 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 NSFP46459 744 aaKnown RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 SCNN1BP51168 640 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ALDH5A1P51649 535 aaPredicted RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 HSD17B4P51659 736 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ERVK-24P63145 666 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 IRX4P78413 519 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 PLCB3Q01970 1234 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 SREBF2Q12772 1141 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 CYLC2Q14093 348 aaPredicted RBP6.03□□□□□ -1.44
RFFL-202ENST00000394597 AGBL2Q5U5Z8 902 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ZNF720Q7Z2F6 126 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 KCNK18Q7Z418 384 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 LRRC34Q8IZ02 419 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 MAB21L3Q8N8X9 362 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 RNF149Q8NC42 400 aa6.03□□□□□ -1.44
RFFL-202ENST00000394597 ETNPPLQ8TBG4 499 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms