RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 DPYDQ12882 1025 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 SNW1Q13573 536 aaKnown RBP15.22■□□□□ 0.03
LIMS1-201ENST00000332345 ZBTB6Q15916 424 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 KNOP1Q1ED39 458 aaKnown RBP15.22■□□□□ 0.03
LIMS1-201ENST00000332345 FAM171A1Q5VUB5 890 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 PDXDC1Q6P996 788 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 CRELD2Q6UXH1 353 aaPredicted RBP15.22■□□□□ 0.03
LIMS1-201ENST00000332345 TMEM184AQ6ZMB5 413 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 ENGASEQ8NFI3 743 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 BEST2Q8NFU1 509 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 SCFD1Q8WVM8 642 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 TIGD1Q96MW7 591 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 TTPALQ9BTX7 342 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 PCIF1Q9H4Z3 704 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 KIAA1586Q9HCI6 787 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.22■□□□□ 0.03
LIMS1-201ENST00000332345 FAM50BQ9Y247 325 aa15.22■□□□□ 0.03
LIMS1-201ENST00000332345 PDCD11Q14690 1871 aaKnown RBP15.22■□□□□ 0.03
LIMS1-201ENST00000332345 H3BQ06 376 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-201ENST00000332345 CNPP09543 421 aaKnown RBP15.21■□□□□ 0.03
LIMS1-201ENST00000332345 STK4Q13043 487 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 TMEM132DQ14C87 1099 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 BMT2Q1RMZ1 405 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 JADE1Q6IE81 842 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 CEP57Q86XR8 500 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 NT5DC4Q86YG4 428 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 NELFCDQ8IXH7 590 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 GPD1LQ8N335 351 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 GOLGA5Q8TBA6 731 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 NOC3LQ8WTT2 800 aaKnown RBP15.21■□□□□ 0.03
LIMS1-201ENST00000332345 RIN2Q8WYP3 895 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-201ENST00000332345 CASP10Q92851 521 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 SAAL1Q96ER3 474 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 KLHL5Q96PQ7 755 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 CBWD1Q9BRT8 395 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 RXFP1Q9HBX9 757 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 FNIP2Q9P278 1114 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 C2CD2Q9Y426 696 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 NUB1Q9Y5A7 615 aa15.21■□□□□ 0.03
LIMS1-201ENST00000332345 ZNF233A6NK53 670 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 TULP1O00294 542 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-201ENST00000332345 TGFB1I1O43294 461 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 RHOBTB3O94955 611 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 ADH1AP07327 375 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 PRR29P0C7W0 189 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 BMP1P13497 986 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 LRPAP1P30533 357 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 DLX2Q07687 328 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-201ENST00000332345 KCNC3Q14003 757 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 KCNB1Q14721 858 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 SPATA1Q5VX52 437 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 LLGL2Q6P1M3 1020 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-201ENST00000332345 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-201ENST00000332345 CACTINQ8WUQ7 758 aaKnown RBP15.2■□□□□ 0.02
LIMS1-201ENST00000332345 IPO9Q96P70 1041 aaKnown RBP15.2■□□□□ 0.02
LIMS1-201ENST00000332345 AGPAT3Q9NRZ7 376 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 RBAKQ9NYW8 714 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-201ENST00000332345 HSPBP1Q9NZL4 362 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 CLEC1BQ9P126 229 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 DPP7Q9UHL4 492 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 CD207Q9UJ71 328 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 HCFC2Q9Y5Z7 792 aa15.2■□□□□ 0.02
LIMS1-201ENST00000332345 TCF20Q9UGU0 1960 aaKnown RBP15.19■□□□□ 0.02
LIMS1-201ENST00000332345 GOLGA8IPA6NC78 632 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 GOLGA8JA6NMD2 632 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 KINO60870 393 aaKnown RBP15.19■□□□□ 0.02
LIMS1-201ENST00000332345 TBX10O75333 385 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 SMC2O95347 1197 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 GLP2RO95838 553 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 C1RP00736 705 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 HOXB8P17481 243 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-201ENST00000332345 FGFR3P22607 806 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 PAX3P23760 479 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 KCNQ1P51787 676 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 SURF1Q15526 300 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 PTCRAQ6ISU1 281 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-201ENST00000332345 CD300LGQ6UXG3 332 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 BRSK2Q8IWQ3 736 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 ELOA2Q8IYF1 753 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-201ENST00000332345 PIK3R5Q8WYR1 880 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 MSLNLQ96KJ4 702 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 B3GALT6Q96L58 329 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 RMND1Q9NWS8 449 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 TUBGCP4Q9UGJ1 667 aa15.19■□□□□ 0.02
LIMS1-201ENST00000332345 BARX2Q9UMQ3 279 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-201ENST00000332345 ANK1P16157 1881 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 GRXCR2A6NFK2 248 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 CLIC2O15247 247 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 TEX28O15482 410 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 NFICP08651 508 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 IGFBP6P24592 240 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-201ENST00000332345 MCM4P33991 863 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 BRCC3P46736 316 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 CLCN4P51793 760 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 UBE2HP62256 183 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 PNOCQ13519 176 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 CLUL1Q15846 466 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 RTP2Q5QGT7 225 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 ANKRD54Q6NXT1 300 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms