RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 LINC01553A4QN01 128 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 CAVIN2O95810 425 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 POMCP01189 267 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 MARSP56192 900 aaKnown RBP19.72■□□□□ 0.75
CCDC40-213ENST00000574933 TUSC3Q13454 348 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 ANO6Q4KMQ2 910 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 PAN2Q504Q3 1202 aaKnown RBP19.72■□□□□ 0.75
CCDC40-213ENST00000574933 SPATA1Q5VX52 437 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 JADE1Q6IE81 842 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 INTS8Q75QN2 995 aaKnown RBP19.72■□□□□ 0.75
CCDC40-213ENST00000574933 EFCAB13Q8IY85 973 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 COLGALT2Q8IYK4 626 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 FAM186BQ8IYM0 893 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 PLEKHO2Q8TD55 490 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 TMEM175Q9BSA9 504 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 SRRTQ9BXP5 876 aaKnown RBP19.72■□□□□ 0.75
CCDC40-213ENST00000574933 PLXNA4Q9HCM2 1894 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 PDE11AQ9HCR9 933 aa19.72■□□□□ 0.75
CCDC40-213ENST00000574933 UBQLN1Q9UMX0 589 aaKnown RBP19.72■□□□□ 0.75
CCDC40-213ENST00000574933 LAMA2P24043 3122 aaKnown RBP19.71■□□□□ 0.75
CCDC40-213ENST00000574933 XPOTO43592 962 aaKnown RBP19.71■□□□□ 0.75
CCDC40-213ENST00000574933 B4GALT3O60512 393 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 DDHD2O94830 711 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 GNA14O95837 355 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 EPB41P11171 864 aaKnown RBP19.71■□□□□ 0.75
CCDC40-213ENST00000574933 MYOGP15173 224 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 PBX2P40425 430 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 GLRA4Q5JXX5 417 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 FRMD5Q7Z6J6 570 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 ZNF280BQ86YH2 543 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 NOC3LQ8WTT2 800 aaKnown RBP19.71■□□□□ 0.75
CCDC40-213ENST00000574933 KIF12Q96FN5 646 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 CGRRF1Q99675 332 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 NAT10Q9H0A0 1025 aaKnown RBP19.71■□□□□ 0.75
CCDC40-213ENST00000574933 THAP9Q9H5L6 903 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 METTL14Q9HCE5 456 aaKnown RBP19.71■□□□□ 0.75
CCDC40-213ENST00000574933 RWDD3Q9Y3V2 267 aa19.71■□□□□ 0.75
CCDC40-213ENST00000574933 CA3P07451 260 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 NFICP08651 508 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 LAG3P18627 525 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 DNAJB2P25686 324 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 LRPAP1P30533 357 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 ZNF445P59923 1031 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 RNASELQ05823 741 aaKnown RBP19.7■□□□□ 0.74
CCDC40-213ENST00000574933 SOX4Q06945 474 aaPredicted RBP19.7■□□□□ 0.74
CCDC40-213ENST00000574933 BFSP1Q12934 665 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 TMEM132DQ14C87 1099 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 USP37Q86T82 979 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 IRF2BP1Q8IU81 584 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 WDR49Q8IV35 697 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 FAM212AQ96EL1 285 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 EEF2KMTQ96G04 330 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 UROC1Q96N76 676 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 SAMD11Q96NU1 681 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 FAM193BQ96PV7 902 aaPredicted RBP19.7■□□□□ 0.74
CCDC40-213ENST00000574933 INTS13Q9NVM9 706 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 HCSTQ9UBK5 93 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 VWA8A3KMH1 1905 aa19.7■□□□□ 0.74
CCDC40-213ENST00000574933 IKBKBO14920 756 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 ARHGEF15O94989 841 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 VAMP7P51809 220 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 AP3M2P53677 418 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 ERVK-21P61565 698 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 MYL5Q02045 173 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 TAP1Q03518 808 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 C1orf220Q5T0J3 134 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 LRSAM1Q6UWE0 723 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 CACTINQ8WUQ7 758 aaKnown RBP19.69■□□□□ 0.74
CCDC40-213ENST00000574933 DDX27Q96GQ7 796 aaKnown RBP19.69■□□□□ 0.74
CCDC40-213ENST00000574933 FNBP1Q96RU3 617 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 DNAJB4Q9UDY4 337 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 ARMCX3Q9UH62 379 aaPredicted RBP19.69■□□□□ 0.74
CCDC40-213ENST00000574933 MYO7AQ13402 2215 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 LAMA3Q16787 3333 aa19.69■□□□□ 0.74
CCDC40-213ENST00000574933 ATG2AQ2TAZ0 1938 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 TMEM265A0A087WTH1 108 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 LRRIQ3A6PVS8 624 aaPredicted RBP19.68■□□□□ 0.74
CCDC40-213ENST00000574933 C5orf67F2Z3F1 127 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 GALTP07902 379 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 KRT13P13646 458 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 RPL9P32969 192 aaKnown RBP19.68■□□□□ 0.74
CCDC40-213ENST00000574933 ZNF165P49910 485 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 SPAG1Q07617 926 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 NCAPHQ15003 741 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 DUOXA2Q1HG44 320 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 KCNT2Q6UVM3 1135 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 COLGALT1Q8NBJ5 622 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 BEST2Q8NFU1 509 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 C18orf25Q96B23 403 aaPredicted RBP19.68■□□□□ 0.74
CCDC40-213ENST00000574933 CCDC127Q96BQ5 260 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 PLVAPQ9BX97 442 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 NKX2-4Q9H2Z4 354 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 AAASQ9NRG9 546 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 NFE2L3Q9Y4A8 694 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 PTPRJQ12913 1337 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 CHD9Q3L8U1 2897 aa19.68■□□□□ 0.74
CCDC40-213ENST00000574933 ANO9A1A5B4 782 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 TMEM189-UBE2V1I3L0A0 370 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 ALDH2P05091 517 aa19.67■□□□□ 0.74
CCDC40-213ENST00000574933 RB1P06400 928 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms