RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 KYAT1Q16773 422 aa21.27■□□□□ 0.99
CLN3-225ENST00000566824 ZNF658Q5TYW1 1059 aaPredicted RBP21.27■□□□□ 0.99
CLN3-225ENST00000566824 JADE1Q6IE81 842 aa21.27■□□□□ 0.99
CLN3-225ENST00000566824 CD300LGQ6UXG3 332 aa21.27■□□□□ 0.99
CLN3-225ENST00000566824 GUF1Q8N442 669 aaKnown RBP21.27■□□□□ 0.99
CLN3-225ENST00000566824 GAS2L1Q99501 681 aaPredicted RBP21.27■□□□□ 0.99
CLN3-225ENST00000566824 PLEKHA5Q9HAU0 1116 aa21.27■□□□□ 0.99
CLN3-225ENST00000566824 RMND1Q9NWS8 449 aa21.27■□□□□ 0.99
CLN3-225ENST00000566824 POU3F3P20264 500 aaPredicted RBP21.26■□□□□ 0.99
CLN3-225ENST00000566824 MCM4P33991 863 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 PPP2R3AQ06190 1150 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 MORC3Q14149 939 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 SCARA3Q6AZY7 606 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 TAS1R1Q7RTX1 841 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 EFCAB13Q8IY85 973 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 GPD1LQ8N335 351 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 HASPINQ8TF76 798 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 KIF12Q96FN5 646 aa21.26■□□□□ 0.99
CLN3-225ENST00000566824 KIF4AO95239 1232 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 EFEMP2O95967 443 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 CLCNKBP51801 687 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 HS2ST1Q7LGA3 356 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 BRSK2Q8IWQ3 736 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 C12orf56Q8IXR9 622 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 RDH13Q8NBN7 331 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 C3orf58Q8NDZ4 430 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 MRPL38Q96DV4 380 aaKnown RBP21.25■□□□□ 0.99
CLN3-225ENST00000566824 FBXL18Q96ME1 805 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 DMAC2Q9NW81 257 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 KIAA1468Q9P260 1216 aa21.25■□□□□ 0.99
CLN3-225ENST00000566824 VWA8A3KMH1 1905 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 TULP1O00294 542 aaPredicted RBP21.24■□□□□ 0.99
CLN3-225ENST00000566824 PDXKO00764 312 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 PPM1AP35813 382 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 CASP4P49662 377 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 PMS1P54277 932 aaKnown RBP21.24■□□□□ 0.99
CLN3-225ENST00000566824 HSP90AA2PQ14568 343 aaPredicted RBP21.24■□□□□ 0.99
CLN3-225ENST00000566824 CCDC85BQ15834 202 aaPredicted RBP21.24■□□□□ 0.99
CLN3-225ENST00000566824 ZCWPW2Q504Y3 356 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 ADSSL1Q8N142 457 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 MICALL1Q8N3F8 863 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 AUTS2Q8WXX7 1259 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 TMEM169Q96HH4 297 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 GZF1Q9H116 711 aaPredicted RBP21.24■□□□□ 0.99
CLN3-225ENST00000566824 PDE11AQ9HCR9 933 aa21.24■□□□□ 0.99
CLN3-225ENST00000566824 RBAKQ9NYW8 714 aaPredicted RBP21.24■□□□□ 0.99
CLN3-225ENST00000566824 PTPRJQ12913 1337 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 SCN1AP35498 2009 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 PPP1R3GB7ZBB8 358 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 GOLGA6L22H0YM25 854 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 PPEF2O14830 753 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 FSCN2O14926 492 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 LDHAP00338 332 aaKnown RBP21.23■□□□□ 0.99
CLN3-225ENST00000566824 NR3C1P04150 777 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 SNRPFP62306 86 aaKnown RBP21.23■□□□□ 0.99
CLN3-225ENST00000566824 UPP1Q16831 310 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 XXYLT1Q8NBI6 393 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 PLEKHO2Q8TD55 490 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 B3GALT6Q96L58 329 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 GPR62Q9BZJ7 368 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 TRAF3IP3Q9Y228 551 aa21.23■□□□□ 0.99
CLN3-225ENST00000566824 EYSQ5T1H1 3165 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 SNRNP35Q16560 246 aaKnown RBP21.22■□□□□ 0.99
CLN3-225ENST00000566824 COBLL1Q53SF7 1204 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 LMBRD2Q68DH5 695 aaPredicted RBP21.22■□□□□ 0.99
CLN3-225ENST00000566824 ADGRD2Q7Z7M1 963 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 DDX53Q86TM3 631 aaKnown RBP21.22■□□□□ 0.99
CLN3-225ENST00000566824 PPM1EQ8WY54 764 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 COLEC11Q9BWP8 271 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 LMAN2LQ9H0V9 348 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 NUP62CLQ9H1M0 184 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 TLR9Q9NR96 1032 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 CGNQ9P2M7 1197 aaKnown RBP21.22■□□□□ 0.99
CLN3-225ENST00000566824 LZTS1Q9Y250 596 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 STXBP5LQ9Y2K9 1186 aa21.22■□□□□ 0.99
CLN3-225ENST00000566824 TRIM49BA6NDI0 452 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 ZNF233A6NK53 670 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 HIDE1A8MVS5 230 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 I3L4J1 428 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 PODXLO00592 558 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 KIAA0391O15091 583 aaKnown RBP21.21■□□□□ 0.99
CLN3-225ENST00000566824 KRT17Q04695 432 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 UBE3AQ05086 875 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 TMEM132DQ14C87 1099 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 SPATA1Q5VX52 437 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 PLPP4Q5VZY2 271 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 ANKRD40Q6AI12 368 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 SLC9A9Q8IVB4 645 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 CD302Q8IX05 232 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 RNF168Q8IYW5 571 aaPredicted RBP21.21■□□□□ 0.99
CLN3-225ENST00000566824 VPS52Q8N1B4 723 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 GOLGA5Q8TBA6 731 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 EEF2KMTQ96G04 330 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 ZBP1Q9H171 429 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 ASB7Q9H672 318 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 SLC38A7Q9NVC3 462 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 LMCD1Q9NZU5 365 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 ADAM28Q9UKQ2 775 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 BRWD1Q9NSI6 2320 aa21.21■□□□□ 0.99
CLN3-225ENST00000566824 EXOC3O60645 756 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms