RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ACOT2P49753 483 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 ELAVL2Q12926 359 aaKnown RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 CAMK1Q14012 370 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 ZNF658Q5TYW1 1059 aaPredicted RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 CRELD2Q6UXH1 353 aaPredicted RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 SLC9A9Q8IVB4 645 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 GPR65Q8IYL9 337 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 RNF168Q8IYW5 571 aaPredicted RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 XXYLT1Q8NBI6 393 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 FBXL18Q96ME1 805 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 ZMAT2Q96NC0 199 aaKnown RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 FAM213AQ9BRX8 229 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 KCTD10Q9H3F6 313 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 RBAKQ9NYW8 714 aaPredicted RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 HSPBP1Q9NZL4 362 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 CHD7Q9P2D1 2997 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 ADAM28Q9UKQ2 775 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 SSX2IPQ9Y2D8 614 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 PRG3Q9Y2Y8 225 aaPredicted RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 CITO14578 2027 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 CASTOR2A6NHX0 329 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 ZNF233A6NK53 670 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 LACTBL1A8MY62 500 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 NCK2O43639 380 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 CALUO43852 315 aaPredicted RBP14.12□□□□□ -0.15
NEDD8-208ENST00000560427 EFEMP2O95967 443 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 SOD2P04179 222 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 PAX3P23760 479 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 DNAJB1P25685 340 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 LRPAP1P30533 357 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 SMC1AQ14683 1233 aaKnown RBP14.12□□□□□ -0.15
NEDD8-208ENST00000560427 ZBTB6Q15916 424 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 NFIL3Q16649 462 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 UPP1Q16831 310 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 DCLRE1AQ6PJP8 1040 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 TRIML1Q8N9V2 468 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 BCL7CQ8WUZ0 217 aaPredicted RBP14.12□□□□□ -0.15
NEDD8-208ENST00000560427 SAAL1Q96ER3 474 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 KIF12Q96FN5 646 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 CDCA3Q99618 268 aaPredicted RBP14.12□□□□□ -0.15
NEDD8-208ENST00000560427 TCF25Q9BQ70 676 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 HERC2P3Q9BVR0 1158 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 ZBP1Q9H171 429 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 CXCL16Q9H2A7 254 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 ENTPD7Q9NQZ7 604 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 LMBRD1Q9NUN5 540 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 TRAF3IP3Q9Y228 551 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 IRAK3Q9Y616 596 aa14.12□□□□□ -0.15
NEDD8-208ENST00000560427 TRAPPC3O43617 180 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 TADA2AO75478 443 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 KIF4AO95239 1232 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 SLC34A2O95436 690 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 CTSAP10619 480 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 TMEM132DQ14C87 1099 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 SURF1Q15526 300 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 SPATA1Q5VX52 437 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 FUT10Q6P4F1 479 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 VPS52Q8N1B4 723 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 BEST2Q8NFU1 509 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 PCIF1Q9H4Z3 704 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 PLXNA4Q9HCM2 1894 aa14.11□□□□□ -0.15
NEDD8-208ENST00000560427 PODXLO00592 558 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 B3GAT3O94766 335 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 URODP06132 367 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 IRS1P35568 1242 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 CLCNKBP51801 687 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 ERVFC1P60507 584 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 CREMQ03060 361 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 SOX4Q06945 474 aaPredicted RBP14.1□□□□□ -0.15
NEDD8-208ENST00000560427 STIM1Q13586 685 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 SNRNP35Q16560 246 aaKnown RBP14.1□□□□□ -0.15
NEDD8-208ENST00000560427 EDRF1Q3B7T1 1238 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 JADE1Q6IE81 842 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 PDXDC1Q6P996 788 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 TMC7Q7Z402 723 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 MICALL1Q8N3F8 863 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 MICAL1Q8TDZ2 1067 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 CLSTN2Q9H4D0 955 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 DMAC2Q9NW81 257 aa14.1□□□□□ -0.15
NEDD8-208ENST00000560427 PDCD11Q14690 1871 aaKnown RBP14.1□□□□□ -0.15
NEDD8-208ENST00000560427 TRANK1O15050 2925 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 GOLGA8IPA6NC78 632 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 GOLGA8JA6NMD2 632 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 CLIC2O15247 247 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 EXOC3O60645 756 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 MBD3O95983 291 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 NR3C1P04150 777 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 NFICP08651 508 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 RPL13P26373 211 aaKnown RBP14.09□□□□□ -0.15
NEDD8-208ENST00000560427 GLUD2P49448 558 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 CYP2J2P51589 502 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 DSG1Q02413 1049 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 MORC3Q14149 939 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 COL19A1Q14993 1142 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 USP41Q3LFD5 358 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 ZCWPW2Q504Y3 356 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 TCEAL5Q5H9L2 206 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 PLPP4Q5VZY2 271 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 FOXR2Q6PJQ5 311 aa14.09□□□□□ -0.15
NEDD8-208ENST00000560427 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms