RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 AFF2P51816 1311 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 SYCE1LA8MT33 242 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 RPA1P27694 616 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 CENPCQ03188 943 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 STK4Q13043 487 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 MFSD14CQ5VZR4 134 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 CYFIP1Q7L576 1253 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 SMARCAD1Q9H4L7 1026 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 NSMCE4AQ9NXX6 385 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 ADA2Q9NZK5 511 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 PCDHB2Q9Y5E7 798 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 FGFR4P22455 802 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 LRRC14Q15048 493 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 DNAL1Q4LDG9 190 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 MMGT1Q8N4V1 131 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 GTF3C2Q8WUA4 911 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 PLEKHA5Q9HAU0 1116 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 MAP3K20Q9NYL2 800 aaKnown RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 HACD3Q9P035 362 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 ABT1Q9ULW3 272 aaKnown RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 FARP1Q9Y4F1 1045 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 PDHBP11177 359 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 TPI1P60174 286 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 ABCE1P61221 599 aaKnown RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 CAPRIN1Q14444 709 aaKnown RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 ZNF235Q14590 738 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 WDR72Q3MJ13 1102 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 FASTKD1Q53R41 847 aaKnown RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 AGGF1Q8N302 714 aaeCLIP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 AFG1LQ8WV93 481 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 STAMBPL1Q96FJ0 436 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 RBM15Q96T37 977 aaKnown RBP eCLIP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 TMEM8AQ9HCN3 771 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 EIF3HO15372 352 aaKnown RBP eCLIP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 CAMTA2O94983 1202 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 RASA1P20936 1047 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 HOXD10P28358 340 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 NCOA4Q13772 614 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 HIC1Q14526 733 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 SEPT1Q8WYJ6 367 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 TSPAN17Q96FV3 270 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 FRMD8Q9BZ67 464 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-208ENST00000553289 EPC1Q9H2F5 836 aa12.16□□□□□ -0.46
SYNE2-208ENST00000553289 NPHP3-ACAD11A0A0J9YXS1 232 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ESRRBO95718 433 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 TEX2Q8IWB9 1127 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 PDCD6IPQ8WUM4 868 aaKnown RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 RANBP17Q9H2T7 1088 aaKnown RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ZCCHC17Q9NP64 241 aaKnown RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 SCHIP1Q9P0W5 487 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 TEKT2Q9UIF3 430 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ZNRF3Q9ULT6 936 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 C3orf70A6NLC5 250 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 TRAPPC3O43617 180 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 IL10P22301 178 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 HDAC4P56524 1084 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 GUCY1A3Q02108 690 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 NAA30Q147X3 362 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ANO4Q32M45 955 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 FBXO33Q7Z6M2 555 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 RBBP8NLQ8NC74 664 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 OR6P1Q8NGX9 317 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 VCPKMTQ9H867 229 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 KLC4Q9NSK0 619 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 AGPAT5Q9NUQ2 364 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ARHGAP26Q9UNA1 814 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 FAM205CA6NFA0 338 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 KCNN4O15554 427 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 SCFD1Q8WVM8 642 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ASIC4Q96FT7 647 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 EGFL8Q99944 293 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 EPB41L4AQ9HCS5 686 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ANKEF1Q9NU02 776 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 ABCF3Q9NUQ8 709 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 PSD3Q9NYI0 1048 aa12.15□□□□□ -0.46
SYNE2-208ENST00000553289 TXNP10599 105 aaKnown RBP12.15□□□□□ -0.47
SYNE2-208ENST00000553289 ACADSBP45954 432 aa12.15□□□□□ -0.47
SYNE2-208ENST00000553289 VEPH1Q14D04 833 aa12.15□□□□□ -0.47
SYNE2-208ENST00000553289 HABP4Q5JVS0 413 aaKnown RBP12.15□□□□□ -0.47
SYNE2-208ENST00000553289 C17orf75Q9HAS0 396 aa12.15□□□□□ -0.47
SYNE2-208ENST00000553289 PAK5Q9P286 719 aa12.15□□□□□ -0.47
SYNE2-208ENST00000553289 WARS2Q9UGM6 360 aaKnown RBP12.15□□□□□ -0.47
SYNE2-208ENST00000553289 CD163L1Q9NR16 1453 aa12.15□□□□□ -0.47
SYNE2-208ENST00000553289 E9PCH4 1651 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 TCP11X1B4DZS4 312 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 FDPSP14324 419 aaKnown RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 RAD23BP54727 409 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ZBTB41Q5SVQ8 909 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 RAD9BQ6WBX8 426 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 APPL2Q8NEU8 664 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 OR9Q1Q8NGQ5 310 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ZNF473Q8WTR7 871 aaKnown RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ISCUQ9H1K1 167 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 GPBP1L1Q9HC44 474 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 PRR12Q9ULL5 1215 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 USP15Q9Y4E8 981 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-208ENST00000553289 C1orf167Q5SNV9 1468 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ZBBXA8MT70 800 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ZNF197O14709 1029 aa12.14□□□□□ -0.47
SYNE2-208ENST00000553289 ZNF185O15231 689 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms