RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 EPHB6O15197 1021 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 GRM6O15303 877 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 NDUFA10O95299 355 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 GLRA2P23416 452 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 HOXA11P31270 313 aaPredicted RBP12.96□□□□□ -0.34
CLIP1-208ENST00000537004 ARL2P36404 184 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 GNG11P61952 73 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 TFF2Q03403 129 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 KCNA1Q09470 495 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 TWF2Q6IBS0 349 aaKnown RBP12.96□□□□□ -0.34
CLIP1-208ENST00000537004 FAM178BQ8IXR5 827 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 EXOC8Q8IYI6 725 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 CMTR2Q8IYT2 770 aaKnown RBP12.96□□□□□ -0.34
CLIP1-208ENST00000537004 TCP11Q8WWU5 503 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 LPPQ93052 612 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 FIZ1Q96SL8 496 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 POLR3FQ9H1D9 316 aaPredicted RBP12.96□□□□□ -0.34
CLIP1-208ENST00000537004 L2HGDHQ9H9P8 463 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 ZNHIT6Q9NWK9 470 aaKnown RBP12.96□□□□□ -0.34
CLIP1-208ENST00000537004 EPN1Q9Y6I3 576 aaPredicted RBP12.96□□□□□ -0.34
CLIP1-208ENST00000537004 ZMYM2Q9UBW7 1377 aa12.96□□□□□ -0.34
CLIP1-208ENST00000537004 A0A0U1RQJ8 604 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 GAS2O43903 313 aaKnown RBP12.95□□□□□ -0.34
CLIP1-208ENST00000537004 HIP1RO75146 1068 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 NR3C1P04150 777 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 RPL13P26373 211 aaKnown RBP12.95□□□□□ -0.34
CLIP1-208ENST00000537004 PBX3P40426 434 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 MAPK7Q13164 816 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 ZC2HC1CQ53FD0 456 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-208ENST00000537004 CLLU1OSQ5K130 101 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 ATRIPQ8WXE1 791 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 WDR24Q96S15 920 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 INO80BQ9C086 356 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-208ENST00000537004 UBE4BO95155 1302 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 C5orf67F2Z3F1 127 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 INO80B-WBP1J3KQ70 363 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 PHKA2P46019 1235 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 MXD4Q14582 209 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-208ENST00000537004 STXBP4Q6ZWJ1 553 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 ZNF720Q7Z2F6 126 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 FRMD5Q7Z6J6 570 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 ZNF598Q86UK7 904 aaKnown RBP12.95□□□□□ -0.34
CLIP1-208ENST00000537004 DAW1Q8N136 415 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 HELQQ8TDG4 1101 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 CPB2Q96IY4 423 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 CASD1Q96PB1 797 aa12.95□□□□□ -0.34
CLIP1-208ENST00000537004 ARMCX3Q9UH62 379 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-208ENST00000537004 TGFB1I1O43294 461 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 ITGB1P05556 798 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 DNAJB1P25685 340 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 CASQ1P31415 396 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 PTENP60484 403 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 CDK17Q00537 523 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 KCNMA1Q12791 1236 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 CAMK1Q14012 370 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 ARHGAP29Q52LW3 1261 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 SPOUT1Q5T280 376 aaKnown RBP12.94□□□□□ -0.34
CLIP1-208ENST00000537004 SRGAP1Q7Z6B7 1085 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 CDR2LQ86X02 465 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-208ENST00000537004 KLHL23Q8NBE8 558 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 NEK11Q8NG66 645 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 BSNDQ8WZ55 320 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 SAMD11Q96NU1 681 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 IRX2Q9BZI1 471 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-208ENST00000537004 ELAC1Q9H777 363 aaKnown RBP12.94□□□□□ -0.34
CLIP1-208ENST00000537004 CHST12Q9NRB3 414 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 PLAGL2Q9UPG8 496 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 USP20Q9Y2K6 914 aa12.94□□□□□ -0.34
CLIP1-208ENST00000537004 COL4A4P53420 1690 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-208ENST00000537004 LRRIQ4A6NIV6 560 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 CLIC2O15247 247 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 SLC16A3O15427 465 aaKnown RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 ASAP2O43150 1006 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 B4GALT5O43286 388 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 AKAP3O75969 853 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 HNRNPH3P31942 346 aaKnown RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 AFF1P51825 1210 aaKnown RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 KCNH2Q12809 1159 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 MRPL38Q96DV4 380 aaKnown RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 C11orf84Q9BUA3 381 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 EDEM3Q9BZQ6 932 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 CWH43Q9H720 699 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 NHEJ1Q9H9Q4 299 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 FAM105AQ9NUU6 356 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 REXO2Q9Y3B8 237 aaKnown RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 PCDHGC5Q9Y5F6 944 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 BDP1A6H8Y1 2624 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 TTLL13PA6NNM8 815 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 KIF5CO60282 957 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 TSPAN1O60635 241 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 SLU7O95391 586 aaKnown RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 EPB41P11171 864 aaKnown RBP12.93□□□□□ -0.34
CLIP1-208ENST00000537004 MBTD1Q05BQ5 628 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 PPP2R3AQ06190 1150 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 AMHR2Q16671 573 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 CCDC170Q8IYT3 715 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 ABI1Q8IZP0 508 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 BAP1Q92560 729 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 KIFC3Q9BVG8 833 aa12.93□□□□□ -0.34
CLIP1-208ENST00000537004 EIF2AQ9BY44 585 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms