RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	SRGAP3	O43295	1099 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	IDH1	O75874	414 aa	Known RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CABYR	O75952	493 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	GJB5	O95377	273 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CHGB	P05060	677 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	UBTFL1	P0CB47	393 aa	Predicted RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SLURP1	P55000	103 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	RBM10	P98175	930 aa	Known RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	HYAL1	Q12794	435 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	IL16	Q14005	1332 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TARBP2	Q15633	366 aa	Known RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SMAD2	Q15796	467 aa	Known RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CWF19L1	Q69YN2	538 aa	Known RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	OVOS1	Q6IE37	1185 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ATF7IP	Q6VMQ6	1270 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	RPTN	Q6XPR3	784 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	DGLUCY	Q7Z3D6	616 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	RPAIN	Q86UA6	219 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SLCO6A1	Q86UG4	719 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FERMT3	Q86UX7	667 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	WDR63	Q8IWG1	891 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FBXO16	Q8IX29	292 aa	Predicted RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	KIAA2013	Q8IYS2	634 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	DCLK2	Q8N568	766 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TMEM105	Q8N8V8	129 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PABPC5	Q96DU9	382 aa	Known RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	MRPL38	Q96DV4	380 aa	Known RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CRELD1	Q96HD1	420 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	RPGRIP1	Q96KN7	1286 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CRBN	Q96SW2	442 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	MEIS3	Q99687	375 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	AP5M1	Q9H0R1	490 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CCDC8	Q9H0W5	538 aa	Predicted RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SMOC2	Q9H3U7	446 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ABHD16B	Q9H3Z7	469 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	VCPKMT	Q9H867	229 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PRKRIP1	Q9H875	184 aa	Predicted RBP	3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	AP5S1	Q9NUS5	200 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ERVK13-1	Q9NX77	482 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PRKAG3	Q9UGI9	489 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ACSL6	Q9UKU0	697 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ZZEF1	O43149	2961 aa		3.57	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FASN	P49327	2511 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PNMA6E	A0A0J9YXQ4	647 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	LOC730098	B7Z3J9	87 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106		H3BNC9	293 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	WDR46	O15213	610 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PI15	O43692	258 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TBX10	O75333	385 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PFKM	P08237	780 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	GSTM1	P09488	218 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	UQCRFS1P1	P0C7P4	283 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SUPT20HL2	P0C7V6	817 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SP100	P23497	879 aa	Predicted RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	NBL1	P41271	181 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	MAPKAPK2	P49137	400 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	RRP1	P56182	461 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PURA	Q00577	322 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ICA1	Q05084	483 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CAMK1	Q14012	370 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PLEKHN1	Q494U1	663 aa	Predicted RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TTC39A	Q5SRH9	613 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	NT5DC1	Q5TFE4	455 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	HLA-DQA1	Q5Y7H0	255 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	BICRAL	Q6AI39	1079 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	IQSEC1	Q6DN90	963 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	GK5	Q6ZS86	529 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TMEM179	Q6ZVK1	233 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	NLRC3	Q7RTR2	1065 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ADGRD2	Q7Z7M1	963 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	RBM23	Q86U06	439 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TMEM192	Q8IY95	271 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	MSL3	Q8N5Y2	521 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FAM133A	Q8N9E0	248 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TP53I13	Q8NBR0	393 aa	Predicted RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SDR42E1	Q8WUS8	393 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	JMJD8	Q96S16	334 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SLF1	Q9BQI6	1058 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	RIOK1	Q9BRS2	568 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TEX13B	Q9BXU2	312 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	TNFRSF12A	Q9NP84	129 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	INCENP	Q9NQS7	918 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CLEC1B	Q9P126	229 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	NOB1	Q9ULX3	412 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	SUPT16H	Q9Y5B9	1047 aa	Known RBP	3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PMF1-BGLAP	U3KQ54	211 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	GPR179	Q6PRD1	2367 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FRMPD3	Q5JV73	1810 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	DOCK2	Q92608	1830 aa		3.56	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ZFYVE26	Q68DK2	2539 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	CEP250	Q9BV73	2442 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FRY	Q5TBA9	3013 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ROBO3	Q96MS0	1386 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FLNB	O75369	2602 aa	Known RBP	3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	MYH2	Q9UKX2	1941 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106		F5H6K3	240 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	FFAR3	O14843	346 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PER2	O15055	1255 aa		3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	PRICKLE3	O43900	615 aa	Predicted RBP	3.55	□□□□□ -1.84
CHMP4A-208	ENST00000534106	ZEB2	O60315	1214 aa		3.55	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms