RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 HLTFQ14527 1009 aaKnown RBP eCLIP6.18□□□□□ -1.42
CD44-225ENST00000527326 RASA2Q15283 850 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SPA17Q15506 151 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 UAP1Q16222 522 aaPredicted RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 OCLNQ16625 522 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 C15orf59Q2T9L4 293 aaPredicted RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 MYLK3Q32MK0 819 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 WDR72Q3MJ13 1102 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SLC9C2Q5TAH2 1124 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SAMD5Q5TGI4 173 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 ZNF468Q5VIY5 522 aaPredicted RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 USPL1Q5W0Q7 1092 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SIGIRRQ6IA17 410 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 NIPAL1Q6NVV3 410 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 BORAQ6PGQ7 559 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 BTNL9Q6UXG8 535 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 DTHD1Q6ZMT9 781 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SIX5Q8N196 739 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 ARHGAP24Q8N264 748 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 CLASRPQ8N2M8 674 aaKnown RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 ENAHQ8N8S7 591 aaPredicted RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 SUPT20HQ8NEM7 779 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 OR7G1Q8NGA0 311 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 CEP70Q8NHQ1 597 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SUN5Q8TC36 379 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 RHPN1Q8TCX5 695 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 MORC4Q8TE76 937 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SSH3Q8TE77 659 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 UBLCP1Q8WVY7 318 aaPredicted RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 DPF3Q92784 378 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 STMN2Q93045 179 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 NMD3Q96D46 503 aaKnown RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 BIRC8Q96P09 236 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 PPP1R10Q96QC0 940 aaKnown RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 TCF12Q99081 682 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 HEPHQ9BQS7 1158 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 CENPOQ9BU64 300 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 TUBB6Q9BUF5 446 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 STK33Q9BYT3 514 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 NUF2Q9BZD4 464 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 DDX47Q9H0S4 455 aaKnown RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 SH2D4AQ9H788 454 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 VTA1Q9NP79 307 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 AVENQ9NQS1 362 aaPredicted RBP6.18□□□□□ -1.42
CD44-225ENST00000527326 CNGB3Q9NQW8 809 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 TBC1D23Q9NUY8 699 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 PAG1Q9NWQ8 432 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 ZDHHC7Q9NXF8 308 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 GIN1Q9NXP7 522 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 PCSK1NQ9UHG2 260 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 CAPN11Q9UMQ6 739 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 COQ6Q9Y2Z9 468 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 TELO2Q9Y4R8 837 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 MED23Q9ULK4 1368 aa6.18□□□□□ -1.42
CD44-225ENST00000527326 SERTM1A2A2V5 107 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 FUOMA2VDF0 154 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 SFI1A8K8P3 1242 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 A8MXQ7 604 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 ERVV-2B6SEH9 535 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 H0Y3Z8 333 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 ELL2O00472 640 aaPredicted RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 PFDN6O15212 129 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 MAGEB3O15480 346 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 ZNF862O60290 1169 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 OPHN1O60890 802 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 FARP2O94887 1054 aaPredicted RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 PSMG1O95456 288 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 CTDNEP1O95476 244 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 ESRRBO95718 433 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 NUDT17P0C025 328 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 ZCCHC18P0CG32 403 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 CHRNB1P11230 501 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 COL6A2P12110 1019 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 ZNF16P17020 682 aaPredicted RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 PRKACBP22694 351 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 IL4RP24394 825 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 PTPN4P29074 926 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 GNA11P29992 359 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 BAG6P46379 1132 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 KRT6CP48668 564 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 PCYT1AP49585 367 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 BCAP31P51572 246 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 HSD17B4P51659 736 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 THOP1P52888 689 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 COPB1P53618 953 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 EPHA4P54764 986 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 SEC13P55735 322 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 RPS3AP61247 264 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 PFKPQ01813 784 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 LAMC2Q13753 1193 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 HNRNPDQ14103 355 aaKnown RBP6.17□□□□□ -1.42
CD44-225ENST00000527326 AGAP9Q5VTM2 703 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 DENND2CQ68D51 928 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 PPP1R21Q6ZMI0 780 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 VSIG1Q86XK7 387 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 FAM20CQ8IXL6 584 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 TTC30BQ8N4P2 665 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 FITM2Q8N6M3 262 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 USHBP1Q8N6Y0 703 aa6.17□□□□□ -1.42
CD44-225ENST00000527326 SLC17A8Q8NDX2 589 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms