RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 PDIA3P30101 505 aaKnown RBP15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 RBM25P49756 843 aaKnown RBP15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 LIMK1P53667 647 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 PRSS36Q5K4E3 855 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 POTEHQ6S545 545 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 PRR23BQ6ZRT6 265 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 NEK8Q86SG6 692 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 CDR2LQ86X02 465 aaPredicted RBP15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 MAP4K3Q8IVH8 894 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 HAS1Q92839 578 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 IRF7Q92985 503 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 DYDC2Q96IM9 177 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 JAKMIP1Q96N16 626 aaKnown RBP15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 NAP1L4Q99733 375 aaKnown RBP15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 BRD9Q9H8M2 597 aa15.77■□□□□ 0.12
PRPF40A-211ENST00000493468 ZBTB39O15060 712 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 PTPN2P17706 415 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 RPS6KB1P23443 525 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 MLLT6P55198 1093 aaPredicted RBP15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 SSRP1Q08945 709 aaKnown RBP15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 DMWDQ09019 674 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 SIM2Q14190 667 aaPredicted RBP15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 CTTNQ14247 550 aaKnown RBP15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 FAM187BQ17R55 369 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 FAM3CQ92520 227 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 MSANTD3Q96H12 275 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 TRMT61BQ9BVS5 477 aaKnown RBP15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 NCOA5Q9HCD5 579 aaKnown RBP15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 ZFP14Q9HCL3 533 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 ANKEF1Q9NU02 776 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 PRMT7Q9NVM4 692 aaPredicted RBP15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 CDY1Q9Y6F8 540 aa15.76■□□□□ 0.11
PRPF40A-211ENST00000493468 SLITRK3O94933 977 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 CXCL12P48061 93 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 CCT2P78371 535 aaKnown RBP15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 CYP4A11Q02928 519 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 CDCA2Q69YH5 1023 aaPredicted RBP15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 NCAPH2Q6IBW4 605 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 C1orf228Q6PIY5 440 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 ANKS3Q6ZW76 656 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 SLFN12Q8IYM2 578 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 SPEM1Q8N4L4 309 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 DEPDC1BQ8WUY9 529 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 ASB16Q96NS5 453 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 LMAN1LQ9HAT1 526 aa15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 ZNF334Q9HCZ1 680 aaPredicted RBP15.75■□□□□ 0.11
PRPF40A-211ENST00000493468 CCDC194A0A1B0GVG4 234 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 ZNF197O14709 1029 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 N4BP3O15049 544 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 HRO43593 1189 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 GDF9O60383 454 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 RECQL4O94761 1208 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 LRG1P02750 347 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 CHRNB1P11230 501 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 PSMC3P17980 439 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 SATB1Q01826 763 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 GRM2Q14416 872 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 FAM78AQ5JUQ0 283 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 SLC8B1Q6J4K2 584 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 LONP2Q86WA8 852 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 TPH2Q8IWU9 490 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 ZNF461Q8TAF7 563 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 DDX27Q96GQ7 796 aaKnown RBP15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 POLR3FQ9H1D9 316 aaPredicted RBP15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 FZD8Q9H461 694 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 SNX14Q9Y5W7 946 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 PIAS3Q9Y6X2 628 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 FRYQ5TBA9 3013 aa15.74■□□□□ 0.11
PRPF40A-211ENST00000493468 WDR27A2RRH5 827 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 TRAPPC3O43617 180 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 CCNT1O60563 726 aaKnown RBP15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 ABLIM3O94929 683 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 HSPA4P34932 840 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 RARRES1P49788 294 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 PTGDRQ13258 359 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 GAS6Q14393 721 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 IL31Q6EBC2 164 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 VITQ6UXI7 678 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 SMARCD2Q92925 531 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 UROC1Q96N76 676 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 HSD17B14Q9BPX1 270 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 PDZD7Q9H5P4 517 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 TRPV4Q9HBA0 871 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 SNTG2Q9NY99 539 aa15.73■□□□□ 0.11
PRPF40A-211ENST00000493468 LRRIQ4A6NIV6 560 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 CHURC1-FNTBB4DL54 471 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 K7ESF4 209 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 ARNTLO00327 626 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 TM4SF5O14894 197 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 MARCH6O60337 910 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 B3GAT3O94766 335 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 BAG4O95429 457 aaKnown RBP15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 TKTP29401 623 aaKnown RBP15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 GDI1P31150 447 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 HOXA6P31267 233 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 FNTBP49356 437 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 ROR1Q01973 937 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 LRRC32Q14392 662 aa15.72■□□□□ 0.11
PRPF40A-211ENST00000493468 CD300LGQ6UXG3 332 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms