RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 KAT5Q92993 513 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 MTMR9Q96QG7 549 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 ZCWPW1Q9H0M4 648 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 A1CFQ9NQ94 594 aaKnown RBP13.59□□□□□ -0.23
SHOX2-205ENST00000490689 MON2Q7Z3U7 1717 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 KIF3CO14782 793 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 CALCAP01258 141 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 AP2B1P63010 937 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 GPSM2P81274 684 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 DEUP1Q05D60 604 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 CBWD6Q4V339 395 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 CBWD3Q5JTY5 395 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 CBWD5Q5RIA9 395 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 DUPD1Q68J44 220 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 LNX1Q8TBB1 728 aaPredicted RBP13.59□□□□□ -0.23
SHOX2-205ENST00000490689 DHX38Q92620 1227 aaKnown RBP13.59□□□□□ -0.23
SHOX2-205ENST00000490689 CBWD1Q9BRT8 395 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 SMYD2Q9NRG4 433 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 CHST7Q9NS84 486 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 ATXN3P54252 364 aaPredicted RBP13.59□□□□□ -0.23
SHOX2-205ENST00000490689 NPEPPSP55786 919 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 SLC4A9Q96Q91 983 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 RPS6KC1Q96S38 1066 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 SMG5Q9UPR3 1016 aaKnown RBP13.59□□□□□ -0.23
SHOX2-205ENST00000490689 DAGLAQ9Y4D2 1042 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 A0A0A6YYK5 440 aaPredicted RBP13.58□□□□□ -0.23
SHOX2-205ENST00000490689 WDR64B1ANS9 1081 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 SLURP2P0DP57 97 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 TFAMQ00059 246 aaKnown RBP13.58□□□□□ -0.23
SHOX2-205ENST00000490689 GEN1Q17RS7 908 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 ARHGEF16Q5VV41 709 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 SNX30Q5VWJ9 437 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 ACAP3Q96P50 834 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 SEPT10Q9P0V9 454 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 UVRAGQ9P2Y5 699 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 PI4KBQ9UBF8 816 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 CHMP2BQ9UQN3 213 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 HEY1Q9Y5J3 304 aa13.58□□□□□ -0.23
SHOX2-205ENST00000490689 PSMA2P25787 234 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 POLGP54098 1239 aaPredicted RBP13.58□□□□□ -0.24
SHOX2-205ENST00000490689 ZBTB33Q86T24 672 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 NUDCD3Q8IVD9 361 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 ATP11CQ8NB49 1132 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 MORC4Q8TE76 937 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 FAF2Q96CS3 445 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 MTBPQ96DY7 904 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.58□□□□□ -0.24
SHOX2-205ENST00000490689 CNOT7Q9UIV1 285 aaKnown RBP13.58□□□□□ -0.24
SHOX2-205ENST00000490689 O00370 1275 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 CASQ2O14958 399 aaPredicted RBP13.58□□□□□ -0.24
SHOX2-205ENST00000490689 MSH4O15457 936 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 ATP9AO75110 1047 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 MMP13P45452 471 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 GRIK5Q16478 980 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 SPRED3Q2MJR0 410 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 MTERF2Q49AM1 385 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 TMEM119Q4V9L6 283 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 CRELD2Q6UXH1 353 aaPredicted RBP13.58□□□□□ -0.24
SHOX2-205ENST00000490689 KIFC3Q9BVG8 833 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 Q9H521 79 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 DCLRE1BQ9H816 532 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 SEL1LQ9UBV2 794 aa13.58□□□□□ -0.24
SHOX2-205ENST00000490689 LOC100653049A0A140TA62 436 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 CES2O00748 559 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 KRT34O76011 436 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 KRT37O76014 449 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 CALB2P22676 271 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 BTKQ06187 659 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 DAB2IPQ5VWQ8 1189 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 SLC25A41Q8N5S1 370 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 HAS1Q92839 578 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 NUF2Q9BZD4 464 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 KIAA1683Q9H0B3 1180 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 FIS1Q9Y3D6 152 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 SYNJ2BP-COX16A0A087WUM0 186 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 TISP43B9A030 160 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 INTS5Q6P9B9 1019 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 CENPTQ96BT3 561 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 RBM41Q96IZ5 413 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 FAM111AQ96PZ2 611 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 DNAJC18Q9H819 358 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 COX16Q9P0S2 106 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 AGAP1Q9UPQ3 857 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 ARHGAP23Q9P227 1491 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 SRRM3A6NNA2 597 aaPredicted RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 DNAJC6O75061 913 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 LCA5LO95447 670 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 ATP4AP20648 1035 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 RRM1P23921 792 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 GNA15P30679 374 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 POLR2BP30876 1174 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 RRP1BQ14684 758 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 ATG16L1Q676U5 607 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 EIF1ADQ8N9N8 165 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 TTC8Q8TAM2 541 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 STK32AQ8WU08 396 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 PPWD1Q96BP3 646 aaKnown RBP13.57□□□□□ -0.24
SHOX2-205ENST00000490689 NSL1Q96IY1 281 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 FAM81BQ96LP2 452 aa13.57□□□□□ -0.24
SHOX2-205ENST00000490689 DDX50Q9BQ39 737 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms