RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CPNE7Q9UBL6 633 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 ZNF69Q9UC07 566 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 AFF4Q9UHB7 1163 aaKnown RBP6.25□□□□□ -1.41
UPF3B-203ENST00000478840 PGAP2Q9UHJ9 254 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 CPA4Q9UI42 421 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 ANAPC4Q9UJX5 808 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 ZDHHC8Q9ULC8 765 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 PCDHA6Q9UN73 950 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 PCDHA1Q9Y5I3 950 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 DGKBQ9Y6T7 804 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 ATRNL1Q5VV63 1379 aa6.25□□□□□ -1.41
UPF3B-203ENST00000478840 APOL1O14791 398 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 ALOX15P16050 662 aaPredicted RBP6.24□□□□□ -1.41
UPF3B-203ENST00000478840 RPL13P26373 211 aaKnown RBP6.24□□□□□ -1.41
UPF3B-203ENST00000478840 TECP42680 631 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 CCT5P48643 541 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 FLT3LGP49771 235 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 MRE11P49959 708 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 MEOX1P50221 254 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 RENBPP51606 427 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 EPHB3P54753 998 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 ELF2Q15723 593 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 GAGE13Q4V321 117 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 MPZL3Q6UWV2 235 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 Q6ZUG5 572 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 ZNF354CQ86Y25 554 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 PLXDC1Q8IUK5 500 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 CELF5Q8N6W0 485 aaKnown RBP6.24□□□□□ -1.41
UPF3B-203ENST00000478840 LIN37Q96GY3 246 aaPredicted RBP6.24□□□□□ -1.41
UPF3B-203ENST00000478840 YTHDC1Q96MU7 727 aaKnown RBP6.24□□□□□ -1.41
UPF3B-203ENST00000478840 EPB41L4BQ9H329 900 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 JADE2Q9NQC1 790 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 SPATA6Q9NWH7 488 aaPredicted RBP6.24□□□□□ -1.41
UPF3B-203ENST00000478840 MOCS1Q9NZB8 636 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 GTF2A1LQ9UNN4 478 aa6.24□□□□□ -1.41
UPF3B-203ENST00000478840 OAS3Q9Y6K5 1087 aaKnown RBP6.24□□□□□ -1.41
UPF3B-203ENST00000478840 TRIM43BA6NCK2 446 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 LRRC10BA6NIK2 292 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 WNT10BO00744 389 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 NRP1O14786 923 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 WDHD1O75717 1129 aaPredicted RBP6.23□□□□□ -1.41
UPF3B-203ENST00000478840 MATN4O95460 622 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PLA2G1BP04054 148 aaKnown RBP6.23□□□□□ -1.41
UPF3B-203ENST00000478840 JUNP05412 331 aaKnown RBP6.23□□□□□ -1.41
UPF3B-203ENST00000478840 VSIG10L2P0DP72 767 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 FPR1P21462 350 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 CHKAP35790 457 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 LIMS1P48059 325 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PIK3CGP48736 1102 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 HSPA7P48741 367 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 ICA1Q05084 483 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 DUSP2Q05923 314 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PMS2P11Q13670 270 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 MPEG1Q2M385 716 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PRAMEF14Q5SWL7 426 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 OTUD7BQ6GQQ9 843 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 CCDC174Q6PII3 467 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 LDHAL6AQ6ZMR3 332 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PDZD4Q76G19 769 aaPredicted RBP6.23□□□□□ -1.41
UPF3B-203ENST00000478840 ATP11CQ8NB49 1132 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 REPS2Q8NFH8 660 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 IL17RDQ8NFM7 739 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 GCDHQ92947 438 aaPredicted RBP6.23□□□□□ -1.41
UPF3B-203ENST00000478840 TRIM43Q96BQ3 446 aaPredicted RBP6.23□□□□□ -1.41
UPF3B-203ENST00000478840 CARD11Q9BXL7 1154 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 ENKD1Q9H0I2 346 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 OR10A2Q9H208 303 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 SLC6A15Q9H2J7 730 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 NSUN3Q9H649 340 aaKnown RBP6.23□□□□□ -1.41
UPF3B-203ENST00000478840 FAM53CQ9NYF3 392 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 MYO1AQ9UBC5 1043 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PAXBP1Q9Y5B6 917 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PCDHGB2Q9Y5G2 931 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 ACTL7AQ9Y615 435 aa6.23□□□□□ -1.41
UPF3B-203ENST00000478840 PLA2G6O60733 806 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 TOX4O94842 621 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 CD1AP06126 327 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 HSD3B1P14060 373 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 JUNBP17275 347 aaPredicted RBP6.22□□□□□ -1.41
UPF3B-203ENST00000478840 CD53P19397 219 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 ADCY7P51828 1080 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 SOX8P57073 446 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 ADAM8P78325 824 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 CAP1Q01518 475 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 DLX2Q07687 328 aaPredicted RBP6.22□□□□□ -1.41
UPF3B-203ENST00000478840 BLMHQ13867 455 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 PUM3Q15397 648 aaKnown RBP6.22□□□□□ -1.41
UPF3B-203ENST00000478840 ATP2B3Q16720 1220 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 SLC35G1Q2M3R5 365 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 ARL13BQ3SXY8 428 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 PABPC1LQ4VXU2 614 aaKnown RBP6.22□□□□□ -1.41
UPF3B-203ENST00000478840 ALFQ53S48 1182 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 FAM47AQ5JRC9 791 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 AGBL4Q5VU57 503 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 CIAPIN1Q6FI81 312 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 PGBD2Q6P3X8 592 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 SEM1Q6ZVN7 128 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 LIX1LQ8IVB5 337 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 SYTL1Q8IYJ3 562 aa6.22□□□□□ -1.41
UPF3B-203ENST00000478840 CCDC33Q8N5R6 958 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms