RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 USP10Q14694 798 aaKnown RBP3.09□□□□□ -1.92
VPS13A-208ENST00000423463 PCOLCEQ15113 449 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 SF3B3Q15393 1217 aaKnown RBP3.09□□□□□ -1.92
VPS13A-208ENST00000423463 ATP13A4Q4VNC1 1196 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 KRT26Q7Z3Y9 468 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 CMIPQ8IY22 773 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 OR5AN1Q8NGI8 311 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 SSH1Q8WYL5 1049 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 RELTQ969Z4 430 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 AJUBAQ96IF1 538 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 MEGF9Q9H1U4 602 aa3.09□□□□□ -1.92
VPS13A-208ENST00000423463 NRXN2Q9P2S2 1712 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 ADCY9O60503 1353 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 SCN7AQ01118 1682 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 PTPRCP08575 1304 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 CDHR2Q9BYE9 1310 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 KRTAP4-8A0A0G2JLE6 195 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 KDM1AO60341 852 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 BBOX1O75936 387 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 PRPF6O94906 941 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 PCDH8O95206 1070 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 CNOT4O95628 575 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 PLP2Q04941 152 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 GCKRQ14397 625 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 EIF4HQ15056 248 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 EPHA7Q15375 998 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 TMEM200BQ69YZ2 307 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 ARHGEF18Q6ZSZ5 1173 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 DDX46Q7L014 1031 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 KIF18BQ86Y91 864 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 PHYKPLQ8IUZ5 450 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 RTKN2Q8IZC4 609 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 CHAC2Q8WUX2 184 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 RPGRQ92834 1020 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 FAM89AQ96GI7 184 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 MAML3Q96JK9 1138 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 TTC1Q99614 292 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 CAAP1Q9H8G2 361 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 VTA1Q9NP79 307 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 PPP4R1LQ9P1A2 415 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 DNAI1Q9UI46 699 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 EDARQ9UNE0 448 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 COL4A3BPQ9Y5P4 624 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 IPO8O15397 1037 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 IBSPP21815 317 aaPredicted RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 YY1P25490 414 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 LSSP48449 732 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 RARSP54136 660 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 TERF2Q15554 542 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 BEND3Q5T5X7 828 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 AGBL4Q5VU57 503 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 C11orf74Q86VG3 221 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 REXO1L1PQ8IX06 675 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 SYNE4Q8N205 404 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 AFAP1L2Q8N4X5 818 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 CLRN3Q8NCR9 226 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 ARHGAP45Q92619 1136 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 ANO3Q9BYT9 981 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 API5Q9BZZ5 524 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 TMX4Q9H1E5 349 aaPredicted RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 PCDH12Q9NPG4 1184 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 SMC4Q9NTJ3 1288 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 NOP58Q9Y2X3 529 aaKnown RBP3.08□□□□□ -1.92
VPS13A-208ENST00000423463 ABCC12Q96J65 1359 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 KIF13BQ9NQT8 1826 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 BCORQ6W2J9 1755 aa3.08□□□□□ -1.92
VPS13A-208ENST00000423463 CUTAO60888 179 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 PLATP00750 562 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 SOX5P35711 763 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 MEOX1P50221 254 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 ADCY2Q08462 1091 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 MAP3K12Q12852 859 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 PDCD1Q15116 288 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 CCDC93Q567U6 631 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 COG1Q8WTW3 980 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 SLC5A5Q92911 643 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 E2F7Q96AV8 911 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 PLA2G12BQ9BX93 195 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 IFT22Q9H7X7 185 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 FBXO10Q9UK96 956 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 PPP2R3BQ9Y5P8 575 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 NUP98P52948 1817 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 MATN2O00339 956 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 GPR42O15529 346 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 CELA3BP08861 270 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 HNRNPLP14866 589 aaKnown RBP eCLIP3.07□□□□□ -1.92
VPS13A-208ENST00000423463 BPIP17213 487 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 CD40P25942 277 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 CCT4P50991 539 aaKnown RBP3.07□□□□□ -1.92
VPS13A-208ENST00000423463 RPS8P62241 208 aaKnown RBP3.07□□□□□ -1.92
VPS13A-208ENST00000423463 PPP2CBP62714 309 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 PPP2CAP67775 309 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 OCRLQ01968 901 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 GRAPQ13588 217 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 STAT4Q14765 748 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 DHCR24Q15392 516 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 ZNF568Q3ZCX4 644 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 CCDC152Q4G0S7 254 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 SLC4A10Q6U841 1118 aa3.07□□□□□ -1.92
VPS13A-208ENST00000423463 GRAPLQ8TC17 118 aaPredicted RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms