RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CCDC91Q7Z6B0 441 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 CCDC25Q86WR0 208 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 CCDC197Q8NCU1 140 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 INTS9Q9NV88 658 aaKnown RBP10.55□□□□□ -0.72
SS18-203ENST00000415083 FGFR1OP2Q9NVK5 253 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 NINJ2Q9NZG7 142 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 LARSQ9P2J5 1176 aaKnown RBP10.55□□□□□ -0.72
SS18-203ENST00000415083 TMEM120BA0PK00 339 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 CHUKO15111 745 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 VNN1O95497 513 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 ATP6V1G2O95670 118 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 ACO1P21399 889 aaKnown RBP10.55□□□□□ -0.72
SS18-203ENST00000415083 CYP24A1Q07973 514 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 SPDYE2Q495Y8 402 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 FAM133BQ5BKY9 247 aaKnown RBP10.55□□□□□ -0.72
SS18-203ENST00000415083 MCOLN2Q8IZK6 566 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 MGARPQ8TDB4 240 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 APOBEC3GQ9HC16 384 aaKnown RBP10.55□□□□□ -0.72
SS18-203ENST00000415083 XPNPEP1Q9NQW7 623 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 RIPK3Q9Y572 518 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 NUMBLQ9Y6R0 609 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 RAD17O75943 681 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CCDC172P0C7W6 258 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 FGFR1P11362 822 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 HSPA6P17066 643 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 EIF2AK2P19525 551 aaKnown RBP10.54□□□□□ -0.72
SS18-203ENST00000415083 RWDD2BP57060 319 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 MAP3K10Q02779 954 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 PTK6Q13882 451 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 ATP13A4Q4VNC1 1196 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 ZBTB41Q5SVQ8 909 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 SEL1L2Q5TEA6 688 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 STYK1Q6J9G0 422 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 RAVER2Q9HCJ3 691 aaKnown RBP10.54□□□□□ -0.72
SS18-203ENST00000415083 TMEM8AQ9HCN3 771 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 RAB20Q9NX57 234 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CCPG1Q9ULG6 757 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CD2APQ9Y5K6 639 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 BPTFQ12830 3046 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 TCP11X1B4DZS4 312 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 PLSCR1O15162 318 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 SPOPO43791 374 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 ECM2O94769 699 aaPredicted RBP10.54□□□□□ -0.72
SS18-203ENST00000415083 ZNF252P-AS1Q0IIN9 211 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 KRT39Q6A163 491 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CRELD2Q6UXH1 353 aaPredicted RBP10.54□□□□□ -0.72
SS18-203ENST00000415083 STXBP4Q6ZWJ1 553 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 MON1BQ7L1V2 547 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 TRPM8Q7Z2W7 1104 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CEP57Q86XR8 500 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 C4orf19Q8IY42 314 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 FITM2Q8N6M3 262 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 HOMER2Q9NSB8 354 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 WHRNQ9P202 907 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 FEM1BQ9UK73 627 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 EGFRP00533 1210 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CYP1A1P04798 512 aaPredicted RBP10.54□□□□□ -0.72
SS18-203ENST00000415083 KLRC2P26717 231 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 MTMR1Q13613 665 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 FAM102BQ5T8I3 360 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 PAXIP1Q6ZW49 1069 aaPredicted RBP10.54□□□□□ -0.72
SS18-203ENST00000415083 NIPA1Q7RTP0 329 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 ARMC9Q7Z3E5 817 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 KRT27Q7Z3Y8 459 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CHURC1Q8WUH1 139 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 HEMGNQ9BXL5 484 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 CXorf56Q9H5V9 222 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 RASAL2Q9UJF2 1139 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 ANAPC7Q9UJX3 599 aa10.54□□□□□ -0.72
SS18-203ENST00000415083 TRPC5Q9UL62 973 aaPredicted RBP10.54□□□□□ -0.72
SS18-203ENST00000415083 ECEL1O95672 775 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 TTC4O95801 387 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 WDR4P57081 412 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 RPS6P62753 249 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 ZNF526Q8TF50 670 aaPredicted RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 PRCCQ92733 491 aaPredicted RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 ARHGEF2Q92974 986 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 UTP4Q969X6 686 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 ZBED3Q96IU2 234 aaPredicted RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 UVRAGQ9P2Y5 699 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 MYH9P35579 1960 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 PHIPQ8WWQ0 1821 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 DENND3A2RUS2 1198 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 MFAP3P55082 362 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 FASTKD3Q14CZ7 662 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 TXNRD3NBQ6F5E7 133 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 RSBN1LQ6PCB5 846 aaPredicted RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 ASRGL1Q7L266 308 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 MORC4Q8TE76 937 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 CKAP2Q8WWK9 683 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 SPOCK2Q92563 424 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 NTPCRQ9BSD7 190 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 PDGFDQ9GZP0 370 aaPredicted RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 QTRT2Q9H974 415 aaKnown RBP10.53□□□□□ -0.72
SS18-203ENST00000415083 NOD2Q9HC29 1040 aa10.53□□□□□ -0.72
SS18-203ENST00000415083 TNS1Q9HBL0 1735 aaKnown RBP10.52□□□□□ -0.72
SS18-203ENST00000415083 PASKQ96RG2 1323 aa10.52□□□□□ -0.72
SS18-203ENST00000415083 TULP1O00294 542 aaPredicted RBP10.52□□□□□ -0.72
SS18-203ENST00000415083 C21orf2O43822 256 aa10.52□□□□□ -0.72
SS18-203ENST00000415083 TBC1D12O60347 775 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms