RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 PLIN2Q99541 437 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 TTPALQ9BTX7 342 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 APOL6Q9BWW8 343 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 GBP3Q9H0R5 595 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 S1PR5Q9H228 398 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 SFXN1Q9H9B4 322 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 RPF1Q9H9Y2 349 aaKnown RBP6.97□□□□□ -1.29
USP54-202ENST00000413442 PRDM6Q9NQX0 595 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 PANK4Q9NVE7 773 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 CLEC1BQ9P126 229 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 PCDHA7Q9UN72 937 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 C2CD2Q9Y426 696 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 HCFC2Q9Y5Z7 792 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 ATG2AQ2TAZ0 1938 aa6.97□□□□□ -1.29
USP54-202ENST00000413442 PDCD11Q14690 1871 aaKnown RBP6.96□□□□□ -1.29
USP54-202ENST00000413442 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 MYMKA6NI61 221 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 PI4K2BG5E9Z4 385 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 K7ENM7 598 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 PPP1R37O75864 691 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 B3GAT3O94766 335 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 GLUD1P00367 558 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 CNPP09543 421 aaKnown RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 IDEP14735 1019 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 FGFR3P22607 806 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 PNPLA4P41247 253 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 CLCN4P51793 760 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 TFF2Q03403 129 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 GRIN1Q05586 938 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 RAB33AQ14088 237 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 MYBPC2Q14324 1141 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 DHX8Q14562 1220 aaKnown RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 E2F4Q16254 413 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 SLC10A6Q3KNW5 377 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 LONRF3Q496Y0 759 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 L1TD1Q5T7N2 865 aaKnown RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 PLPP4Q5VZY2 271 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 RESP18Q5W5W9 173 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 TPGS2Q68CL5 300 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 FAM173BQ6P4H8 233 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 LILRA6Q6PI73 481 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 CCDC149Q6ZUS6 474 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 USP49Q70CQ1 688 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 UNC13DQ70J99 1090 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 ADGRD2Q7Z7M1 963 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 GPR149Q86SP6 731 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 ELOA2Q8IYF1 753 aaPredicted RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 SYCP3Q8IZU3 236 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 BEST2Q8NFU1 509 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 ZNF461Q8TAF7 563 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 SPATA18Q8TC71 538 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 ZNF507Q8TCN5 953 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 ACSF2Q96CM8 615 aaPredicted RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 SNX27Q96L92 541 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 FBXL18Q96ME1 805 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 CLIC6Q96NY7 704 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 FIZ1Q96SL8 496 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 TRIM9Q9C026 710 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 KCNH6Q9H252 994 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 ZHX3Q9H4I2 956 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP54-202ENST00000413442 KLK14Q9P0G3 267 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 HSFX1Q9UBD0 423 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 HOOK1Q9UJC3 728 aaKnown RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 CPSF3Q9UKF6 684 aaKnown RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 AGO2Q9UKV8 859 aaKnown RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 DSEQ9UL01 958 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 KCNH3Q9ULD8 1083 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 GDAQ9Y2T3 454 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 NUB1Q9Y5A7 615 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 TCF20Q9UGU0 1960 aaKnown RBP6.96□□□□□ -1.3
USP54-202ENST00000413442 UBE4BO95155 1302 aa6.96□□□□□ -1.3
USP54-202ENST00000413442 TCHHQ07283 1943 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 TTLL13PA6NNM8 815 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 HIDE1A8MVS5 230 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 LOC730098B7Z3J9 87 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 H3BQ06 376 aaPredicted RBP6.95□□□□□ -1.3
USP54-202ENST00000413442 M0QZQ0 153 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 PER2O15055 1255 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 TEX28O15482 410 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 POLR2DO15514 142 aaKnown RBP6.95□□□□□ -1.3
USP54-202ENST00000413442 GPR37L1O60883 481 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 TBX10O75333 385 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 PRPF40AO75400 957 aaKnown RBP6.95□□□□□ -1.3
USP54-202ENST00000413442 MICAL2O94851 1124 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 OAZ2O95190 189 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 GLP2RO95838 553 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 PRKCSHP14314 528 aaPredicted RBP6.95□□□□□ -1.3
USP54-202ENST00000413442 TYMPP19971 482 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 KCNQ1P51787 676 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 CLCNKBP51801 687 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 AFF1P51825 1210 aaKnown RBP6.95□□□□□ -1.3
USP54-202ENST00000413442 NUBP1P53384 320 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 AP3M2P53677 418 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 ZP2Q05996 745 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 ENPEPQ07075 957 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 RAD51AP2Q09MP3 1159 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 MRPL58Q14197 206 aaKnown RBP6.95□□□□□ -1.3
USP54-202ENST00000413442 FAM171A1Q5VUB5 890 aa6.95□□□□□ -1.3
USP54-202ENST00000413442 SPATA1Q5VX52 437 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms