RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 BTDP43251 543 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 OR8H2Q8N162 312 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 ATXN7L3BQ96GX2 97 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 REREQ9P2R6 1566 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 FGFR4P22455 802 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 PLA2G4AP47712 749 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 MMRN1Q13201 1228 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 TMEM270Q6UE05 265 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 SH3BP5LQ7L8J4 393 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 CALML6Q8TD86 181 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 ZNF473Q8WTR7 871 aaKnown RBP9.76□□□□□ -0.85
VPS13A-203ENST00000360280 NARS2Q96I59 477 aaKnown RBP9.76□□□□□ -0.85
VPS13A-203ENST00000360280 PIPSLA2A3N6 862 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 IL12RB1P42701 662 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 NUDT18Q6ZVK8 323 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 STAG2Q8N3U4 1231 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 RNPC3Q96LT9 517 aaKnown RBP9.76□□□□□ -0.85
VPS13A-203ENST00000360280 RPS8P62241 208 aaKnown RBP9.76□□□□□ -0.85
VPS13A-203ENST00000360280 LRRC14Q15048 493 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 ARHGEF26Q96DR7 871 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 FAM167AQ96KS9 214 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 RNPEPQ9H4A4 650 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 DNAJC12Q9UKB3 198 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 GMEB1Q9Y692 573 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 USP39Q53GS9 565 aaKnown RBP9.76□□□□□ -0.85
VPS13A-203ENST00000360280 KLHL24Q6TFL4 600 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 KIFC1Q9BW19 673 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 CTNNAL1Q9UBT7 734 aa9.76□□□□□ -0.85
VPS13A-203ENST00000360280 TBC1D10BQ4KMP7 808 aaPredicted RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 OR6B3Q8NGW1 331 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 CAND2O75155 1236 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 AGBL2Q5U5Z8 902 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 HES6Q96HZ4 224 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KANSL2Q9H9L4 492 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KCNK10P57789 538 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 VSNL1P62760 191 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 DCAF4L1Q3SXM0 396 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KRT73Q86Y46 540 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 RIC8BQ9NVN3 520 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 MRPL39Q9NYK5 338 aaKnown RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 SF3B1O75533 1304 aaKnown RBP eCLIP9.75□□□□□ -0.854e-6■■■■■ 80.4
VPS13A-203ENST00000360280 PRPF3O43395 683 aaKnown RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 CTCFP49711 727 aaPredicted RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 DMPKQ09013 629 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 CDC42BPGQ6DT37 1551 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 TBKBP1A7MCY6 615 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 ARPP19P56211 112 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 TRIQKQ629K1 86 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 PNMA8CA0A1B0GUJ8 204 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 SERHL2Q9H4I8 314 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 SERHLQ9NQF3 203 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 RCOR1Q9UKL0 485 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 PIK3R1P27986 724 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 SLC1A1P43005 524 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 TAB1Q15750 504 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 MICALL2Q8IY33 904 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 DPP10Q8N608 796 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 MCRS1Q96EZ8 462 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KAT6AQ92794 2004 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 HIST1H2AGP0C0S8 130 aaPredicted RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 HIST1H2ADP20671 130 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 NSUN7Q8NE18 718 aaKnown RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 RFFLQ8WZ73 363 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 HIST1H2AHQ96KK5 128 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 HIST1H2AJQ99878 128 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 H2AFJQ9BTM1 129 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 MOV10L1Q9BXT6 1211 aaKnown RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 PDE9AO76083 593 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 ATP6V1B1P15313 513 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KRT20P35900 424 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 PLEKHA7Q6IQ23 1121 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 GSPT2Q8IYD1 628 aaKnown RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 PTPRN2Q92932 1015 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 SEC16BQ96JE7 1060 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 DDX50Q9BQ39 737 aaKnown RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 XDHP47989 1333 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KCNN4O15554 427 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 UBA2Q9UBT2 640 aaPredicted RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KANSL1LA0AUZ9 987 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 ACTR2P61160 394 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 PTPN12Q05209 780 aaKnown RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 MTFR1Q15390 333 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 ZNF467Q7Z7K2 595 aaPredicted RBP9.75□□□□□ -0.85
VPS13A-203ENST00000360280 MYLK2Q9H1R3 596 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 CASZ1Q86V15 1759 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 RCN1Q15293 331 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 ZHX2Q9Y6X8 837 aa9.75□□□□□ -0.85
VPS13A-203ENST00000360280 KPNA4O00629 521 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-203ENST00000360280 SLC16A1P53985 500 aa9.74□□□□□ -0.85
VPS13A-203ENST00000360280 EIF2B5Q13144 721 aaKnown RBP9.74□□□□□ -0.85
VPS13A-203ENST00000360280 ANO4Q32M45 955 aa9.74□□□□□ -0.85
VPS13A-203ENST00000360280 DDX47Q9H0S4 455 aaKnown RBP9.74□□□□□ -0.85
VPS13A-203ENST00000360280 NMRK1Q9NWW6 199 aa9.74□□□□□ -0.85
VPS13A-203ENST00000360280 NR3C1P04150 777 aa9.74□□□□□ -0.85
VPS13A-203ENST00000360280 ZNF200P98182 395 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-203ENST00000360280 CACNB1Q02641 598 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-203ENST00000360280 MDH1BQ5I0G3 518 aa9.74□□□□□ -0.85
VPS13A-203ENST00000360280 ZNF579Q8NAF0 562 aaKnown RBP9.74□□□□□ -0.85
VPS13A-203ENST00000360280 TRPC7Q9HCX4 862 aa9.74□□□□□ -0.85
VPS13A-203ENST00000360280 MTERF2Q49AM1 385 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms