RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 CPSF3Q9UKF6 684 aaKnown RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 PRG3Q9Y2Y8 225 aaPredicted RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 UBE4BO95155 1302 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 CSPG5O95196 566 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 GARTP22102 1010 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 ACOT2P49753 483 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 BCL7CQ8WUZ0 217 aaPredicted RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 ZMAT2Q96NC0 199 aaKnown RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 COLEC11Q9BWP8 271 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 RPF1Q9H9Y2 349 aaKnown RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 TLR9Q9NR96 1032 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 HOOK1Q9UJC3 728 aaKnown RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 TTC26A0AVF1 554 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 KINO60870 393 aaKnown RBP18.23■□□□□ 0.51
SDCBP-201ENST00000260130 RHOBTB3O94955 611 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 ERVFC1P60507 584 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 PNOCQ13519 176 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 ENOX2Q16206 610 aaKnown RBP18.23■□□□□ 0.51
SDCBP-201ENST00000260130 BMT2Q1RMZ1 405 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 TIGD5Q53EQ6 642 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 DDX53Q86TM3 631 aaKnown RBP18.23■□□□□ 0.51
SDCBP-201ENST00000260130 NELFCDQ8IXH7 590 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 KIAA0895Q8NCT3 520 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 MICAL1Q8TDZ2 1067 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 CASTOR2A6NHX0 329 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 IRS1P35568 1242 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 KCNB1Q14721 858 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 ELOA2Q8IYF1 753 aaPredicted RBP18.23■□□□□ 0.51
SDCBP-201ENST00000260130 CBWD1Q9BRT8 395 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 SLC38A7Q9NVC3 462 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 MARCH5Q9NX47 278 aa18.23■□□□□ 0.51
SDCBP-201ENST00000260130 PRRC2BQ5JSZ5 2229 aaKnown RBP18.22■□□□□ 0.51
SDCBP-201ENST00000260130 LACTBL1A8MY62 500 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 GOLGA6L6A8MZA4 724 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 LDHAP00338 332 aaKnown RBP18.22■□□□□ 0.51
SDCBP-201ENST00000260130 ADRB2P07550 413 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 RBM10P98175 930 aaKnown RBP18.22■□□□□ 0.51
SDCBP-201ENST00000260130 POU5F1Q01860 360 aaKnown RBP18.22■□□□□ 0.51
SDCBP-201ENST00000260130 PPP2R3AQ06190 1150 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 PDE12Q6L8Q7 609 aaKnown RBP18.22■□□□□ 0.51
SDCBP-201ENST00000260130 ARMCX5Q6P1M9 558 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 RABGGTAQ92696 567 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 PAAF1Q9BRP4 392 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 NUP62CLQ9H1M0 184 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 NSUN3Q9H649 340 aaKnown RBP18.22■□□□□ 0.51
SDCBP-201ENST00000260130 CACNG4Q9UBN1 327 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 STK39Q9UEW8 545 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 REV3LO60673 3130 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 PRUNE2Q8WUY3 3088 aa18.22■□□□□ 0.51
SDCBP-201ENST00000260130 TGFB1I1O43294 461 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 SNRPFP62306 86 aaKnown RBP18.21■□□□□ 0.51
SDCBP-201ENST00000260130 KNOP1Q1ED39 458 aaKnown RBP18.21■□□□□ 0.51
SDCBP-201ENST00000260130 CRELD2Q6UXH1 353 aaPredicted RBP18.21■□□□□ 0.51
SDCBP-201ENST00000260130 TMC7Q7Z402 723 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 CD302Q8IX05 232 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 VPS52Q8N1B4 723 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 TCF25Q9BQ70 676 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 FAM213AQ9BRX8 229 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 PCIF1Q9H4Z3 704 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 F8W810 466 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 KIAA0391O15091 583 aaKnown RBP18.21■□□□□ 0.51
SDCBP-201ENST00000260130 PLCB2Q00722 1185 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 FAM212AQ96EL1 285 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 SAAL1Q96ER3 474 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 UROC1Q96N76 676 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 NGRNQ9NPE2 291 aaKnown RBP18.21■□□□□ 0.51
SDCBP-201ENST00000260130 ENTPD7Q9NQZ7 604 aa18.21■□□□□ 0.51
SDCBP-201ENST00000260130 FSCN2O14926 492 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 SMC2O95347 1197 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 SOX4Q06945 474 aaPredicted RBP18.2■□□□□ 0.5
SDCBP-201ENST00000260130 TCEAL5Q5H9L2 206 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 HS2ST1Q7LGA3 356 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 ZSWIM2Q8NEG5 633 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 MYRIPQ8NFW9 859 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 FAM200AQ8TCP9 573 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 ZNF830Q96NB3 372 aaPredicted RBP18.2■□□□□ 0.5
SDCBP-201ENST00000260130 GSDMAQ96QA5 445 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 TSPAN18Q96SJ8 248 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 VN1R3Q9BXE9 311 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 GOLGA2P5Q9HBQ8 144 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 AGPAT3Q9NRZ7 376 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 SPTLC3Q9NUV7 552 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 TDRD15B5MCY1 1934 aaKnown RBP18.2■□□□□ 0.5
SDCBP-201ENST00000260130 PLXNA4Q9HCM2 1894 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 EXTL3O43909 919 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 TADA2AO75478 443 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 CLCNKBP51801 687 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 SPAG1Q07617 926 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 BMS1Q14692 1282 aaKnown RBP18.2■□□□□ 0.5
SDCBP-201ENST00000260130 SPATA20Q8TB22 786 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 C18orf25Q96B23 403 aaPredicted RBP18.2■□□□□ 0.5
SDCBP-201ENST00000260130 KIF12Q96FN5 646 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 ASB7Q9H672 318 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 RMND1Q9NWS8 449 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 CGNQ9P2M7 1197 aaKnown RBP18.2■□□□□ 0.5
SDCBP-201ENST00000260130 ADAM28Q9UKQ2 775 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 PCDHGC5Q9Y5F6 944 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 PCDHA5Q9Y5H7 936 aa18.2■□□□□ 0.5
SDCBP-201ENST00000260130 GOLGA8IPA6NC78 632 aa18.19■□□□□ 0.5
SDCBP-201ENST00000260130 GOLGA8JA6NMD2 632 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms