RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ALDH5A1P51649 535 aaPredicted RBP11.43□□□□□ -0.58
USP28-201ENST00000003302 WDR4P57081 412 aaKnown RBP11.43□□□□□ -0.58
USP28-201ENST00000003302 DRP2Q13474 957 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 RAB6CQ53S08 254 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 SGO2Q562F6 1265 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 EIF1ADQ8N9N8 165 aaKnown RBP11.43□□□□□ -0.58
USP28-201ENST00000003302 AGAP11Q8TF27 550 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 RAB6CQ9H0N0 254 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 XPNPEP1Q9NQW7 623 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 SLC12A4Q9UP95 1085 aa11.43□□□□□ -0.58
USP28-201ENST00000003302 MYBL1P10243 752 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 PLS3P13797 630 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 NCALDP61601 193 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 XRCC4Q13426 336 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 MTMR1Q13613 665 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 XKR9Q5GH70 373 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 C11orf63Q6NUN7 778 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 SYTL5Q8TDW5 730 aaPredicted RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 DDX27Q96GQ7 796 aaKnown RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 ONECUT3O60422 494 aaPredicted RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 ERFP50548 548 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 NLRP11P59045 1033 aaKnown RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 IRX3P78415 501 aaPredicted RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 ORC1Q13415 861 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 CDR2LQ86X02 465 aaPredicted RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 SLC9A9Q8IVB4 645 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 CXorf56Q9H5V9 222 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 ZMYND8Q9ULU4 1186 aaPredicted RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 STK38LQ9Y2H1 464 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 GTF2BQ00403 316 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 ZNF252P-AS1Q0IIN9 211 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 MTMR3Q13615 1198 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 ARFGAP2Q8N6H7 521 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 NINJ2Q9NZG7 142 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 ODF2LQ9ULJ1 636 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 TBX20Q9UMR3 447 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 SYNGAP1Q96PV0 1343 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 ATXN2Q99700 1313 aaKnown RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 DNAH14Q0VDD8 3507 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 ATP6V1G2O95670 118 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 CHRNA3P32297 505 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 OGDHQ02218 1023 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 INTS8Q75QN2 995 aaKnown RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 PRR11Q96HE9 360 aaPredicted RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 NAP1L4Q99733 375 aaKnown RBP11.42□□□□□ -0.58
USP28-201ENST00000003302 NOD2Q9HC29 1040 aa11.42□□□□□ -0.58
USP28-201ENST00000003302 MGAMO43451 1857 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 MGRN1O60291 552 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 BCRP11274 1271 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 UNGP13051 313 aaPredicted RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 RARGP13631 454 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 GM2AP17900 193 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 DHX34Q14147 1143 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 TRPM8Q7Z2W7 1104 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 C4orf33Q8N1A6 199 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 CCDC197Q8NCU1 140 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 OR5B17Q8NGF7 314 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 LARSQ9P2J5 1176 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 GOLGA6L10A0A0M3HER8 536 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 OAS1P00973 400 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 CYP1A2P05177 515 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 HARSP12081 509 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 QARSP47897 775 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 SP2Q02086 613 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 CYP1B1Q16678 543 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 RHOT2Q8IXI1 618 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 KLF6Q99612 283 aaPredicted RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 RAB20Q9NX57 234 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 NEU2Q9Y3R4 380 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 A0A1W2PPM1 405 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 MAP2K2P36507 400 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 PTGER2P43116 358 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 CDR2Q01850 454 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 NFIL3Q16649 462 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 KCNV2Q8TDN2 545 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 PAIP2Q9BPZ3 127 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 WDR83Q9BRX9 315 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 TACO1Q9BSH4 297 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 GLT8D2Q9H1C3 349 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 NAALADL1Q9UQQ1 740 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 C2orf71A6NGG8 1288 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 IGF2BP3O00425 579 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP28-201ENST00000003302 VNN1O95497 513 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 P4HBP07237 508 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 HSD17B4P51659 736 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 MYO1EQ12965 1108 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 DNAJC3Q13217 504 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 TDRD10Q5VZ19 366 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 CCDC60Q8IWA6 550 aaPredicted RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 N4BP2L2Q92802 583 aaPredicted RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 TMEM143Q96AN5 459 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 ALG13Q9NP73 1137 aaKnown RBP11.41□□□□□ -0.58
USP28-201ENST00000003302 MCM8Q9UJA3 840 aa11.41□□□□□ -0.58
USP28-201ENST00000003302 STBD1O95210 358 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 ALDH1B1P30837 517 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 PGM5Q15124 567 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 LACTB2Q53H82 288 aaPredicted RBP11.4□□□□□ -0.58
USP28-201ENST00000003302 ERICH1Q86X53 443 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 PGAP2Q9UHJ9 254 aa11.4□□□□□ -0.58
USP28-201ENST00000003302 DNPEPQ9ULA0 475 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms