RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TULP1O00294 542 aaPredicted RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 STAG3L1P0CL83 205 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 AP3M2P53677 418 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 OSTNP61366 133 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 MGAT3Q09327 533 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 LMBRD2Q68DH5 695 aaPredicted RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 IQCEQ6IPM2 695 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 SLC27A1Q6PCB7 646 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 APBB1IPQ7Z5R6 666 aaPredicted RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 TMEM192Q8IY95 271 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 C17orf53Q8N3J3 647 aaPredicted RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 TAS1R2Q8TE23 839 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 SEMA4DQ92854 862 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 CHP1Q99653 195 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 SENP6Q9GZR1 1112 aaPredicted RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 RPF1Q9H9Y2 349 aaKnown RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 STARD7Q9NQZ5 370 aa19.94■□□□□ 0.78
CLN3-254ENST00000637050 AJAP1Q9UKB5 411 aaPredicted RBP19.94■□□□□ 0.78
CLN3-254ENST00000637050 A0A0U1RQG5 324 aaPredicted RBP19.93■□□□□ 0.78
CLN3-254ENST00000637050 DNM1LO00429 736 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 LRRN2O75325 713 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 IL18RAPO95256 599 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 CHRNA1P02708 482 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 CCL5P13501 91 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 RFX1P22670 979 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 JAM2P57087 298 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 PHLDB3Q6NSJ2 640 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 GJB7Q6PEY0 223 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 RAD9BQ6WBX8 426 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 DHX38Q92620 1227 aaKnown RBP19.93■□□□□ 0.78
CLN3-254ENST00000637050 FAM84AQ96KN4 292 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 TRMT13Q9NUP7 481 aaKnown RBP19.93■□□□□ 0.78
CLN3-254ENST00000637050 RAB20Q9NX57 234 aa19.93■□□□□ 0.78
CLN3-254ENST00000637050 B4GALT4O60513 344 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 CXCL8P10145 99 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 GRM5P41594 1212 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 MTF1Q14872 753 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 TRIM71Q2Q1W2 868 aaKnown RBP19.92■□□□□ 0.78
CLN3-254ENST00000637050 SFMBT2Q5VUG0 894 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 TDRD10Q5VZ19 366 aaKnown RBP19.92■□□□□ 0.78
CLN3-254ENST00000637050 FAM228AQ86W67 206 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 OR5B17Q8NGF7 314 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 DEFB118Q96PH6 123 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 RNF208Q9H0X6 261 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 AIPL1Q9NZN9 384 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 DNAJC12Q9UKB3 198 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 OGDHLQ9ULD0 1010 aa19.92■□□□□ 0.78
CLN3-254ENST00000637050 NOC2LQ9Y3T9 749 aaKnown RBP19.92■□□□□ 0.78
CLN3-254ENST00000637050 MEFVO15553 781 aaPredicted RBP19.91■□□□□ 0.78
CLN3-254ENST00000637050 NPTXRO95502 500 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 HSPA8P11142 646 aaKnown RBP19.91■□□□□ 0.78
CLN3-254ENST00000637050 THPOP40225 353 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 FAM212AQ96EL1 285 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 SPAG5Q96R06 1193 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 SEZ6LQ9BYH1 1024 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 STK33Q9BYT3 514 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 SPTLC3Q9NUV7 552 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 NOD1Q9Y239 953 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 ARVCFO00192 962 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 ZC3H11AO75152 810 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLN3-254ENST00000637050 VNN1O95497 513 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 CTSHP09668 335 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 RAPGEF1Q13905 1077 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 FAM26DQ5JW98 314 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 CTU1Q7Z7A3 348 aaKnown RBP19.91■□□□□ 0.78
CLN3-254ENST00000637050 ARHGEF19Q8IW93 802 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 CCAR2Q8N163 923 aaKnown RBP19.91■□□□□ 0.78
CLN3-254ENST00000637050 ACAP3Q96P50 834 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 ARHGAP20Q9P2F6 1191 aa19.91■□□□□ 0.78
CLN3-254ENST00000637050 PIN4Q9Y237 131 aaKnown RBP19.91■□□□□ 0.78
CLN3-254ENST00000637050 ANK1P16157 1881 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 MROH7Q68CQ1 1323 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 CAND2O75155 1236 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 MYCP01106 439 aaPredicted RBP19.9■□□□□ 0.78
CLN3-254ENST00000637050 HLA-DRAP01903 254 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 BIRC3Q13489 604 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 SLC10A6Q3KNW5 377 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 HGSNATQ68CP4 663 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 TOGARAM2Q6ZUX3 1019 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 EFCAB13Q8IY85 973 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 EIF2AQ9BY44 585 aaKnown RBP19.9■□□□□ 0.78
CLN3-254ENST00000637050 ASB7Q9H672 318 aa19.9■□□□□ 0.78
CLN3-254ENST00000637050 LACTBL1A8MY62 500 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 RPS6KA5O75582 802 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 DUOXA2Q1HG44 320 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 UBXN11Q5T124 520 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 CCDC170Q8IYT3 715 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 NT5C1BQ96P26 610 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 CCDC94Q9BW85 323 aaPredicted RBP19.89■□□□□ 0.77
CLN3-254ENST00000637050 GPR88Q9GZN0 384 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 TRPV6Q9H1D0 765 aa19.89■□□□□ 0.77
CLN3-254ENST00000637050 NHEJ1Q9H9Q4 299 aaPredicted RBP19.89■□□□□ 0.77
CLN3-254ENST00000637050 UBE2TQ9NPD8 197 aaPredicted RBP19.89■□□□□ 0.77
CLN3-254ENST00000637050 USP27XA6NNY8 438 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 F8VZ95 297 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 SERPING1P05155 500 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 PIK3CAP42336 1068 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 CDK7P50613 346 aa19.88■□□□□ 0.77
CLN3-254ENST00000637050 DRAP1Q14919 205 aaPredicted RBP19.88■□□□□ 0.77
CLN3-254ENST00000637050 ASIC2Q16515 512 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms