RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TBC1D8O95759 1140 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 C4BPAP04003 597 aaKnown RBP12.12□□□□□ -0.47
LIG3-204ENST00000585740 PRKCBP05771 671 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 CYP2C8P10632 490 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 TNNI1P19237 187 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 TBXAS1P24557 533 aaPredicted RBP12.12□□□□□ -0.47
LIG3-204ENST00000585740 PIK3CAP42336 1068 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 NLRP11P59045 1033 aaKnown RBP12.12□□□□□ -0.47
LIG3-204ENST00000585740 VSNL1P62760 191 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 TNNC1P63316 161 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 GPC5P78333 572 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 POU5F1BQ06416 359 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 LAMTOR4Q0VGL1 99 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 PRPF4BQ13523 1007 aaKnown RBP12.12□□□□□ -0.47
LIG3-204ENST00000585740 MAPK6Q16659 721 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 HSDL1Q3SXM5 330 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 GLIPR1L2Q4G1C9 344 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 BEND6Q5SZJ8 279 aaPredicted RBP12.12□□□□□ -0.47
LIG3-204ENST00000585740 RGMBQ6NW40 437 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 DAAM2Q86T65 1068 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 BRSK2Q8IWQ3 736 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 SLC35G2Q8TBE7 412 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 ACTRT1Q8TDG2 376 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 EPS8L1Q8TE68 723 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 MS4A4AQ96JQ5 239 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 CCDC113Q9H0I3 377 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 ABCB6Q9NP58 842 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 TOPORSQ9NS56 1045 aaPredicted RBP12.12□□□□□ -0.47
LIG3-204ENST00000585740 RNF186Q9NXI6 227 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 TRPC6Q9Y210 931 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 STXBP5LQ9Y2K9 1186 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 ADGRA2Q96PE1 1338 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 KAT6AQ92794 2004 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 SPDYE4A6NLX3 237 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 MAP2K7O14733 419 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 OGTO15294 1046 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 MTA2O94776 668 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 SEC31AO94979 1220 aaKnown RBP12.11□□□□□ -0.47
LIG3-204ENST00000585740 SGPL1O95470 568 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 HLA-DRAP01903 254 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 MARK3P27448 753 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 TNFRSF8P28908 595 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 ADORA2AP29274 412 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 CXCR5P32302 372 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 CBX1P83916 185 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 CDR2Q01850 454 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 ARHGAP1Q07960 439 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 BIRC3Q13489 604 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 IRF5Q13568 498 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 C11orf63Q6NUN7 778 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 MAMDC4Q6UXC1 1216 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 CRELD2Q6UXH1 353 aaPredicted RBP12.11□□□□□ -0.47
LIG3-204ENST00000585740 NOP9Q86U38 636 aaKnown RBP12.11□□□□□ -0.47
LIG3-204ENST00000585740 NT5DC3Q86UY8 548 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 WDR49Q8IV35 697 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 SLC20A1Q8WUM9 679 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 KAT5Q92993 513 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 TRIM11Q96F44 468 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 POP1Q99575 1024 aaKnown RBP12.11□□□□□ -0.47
LIG3-204ENST00000585740 ACO2Q99798 780 aaKnown RBP12.11□□□□□ -0.47
LIG3-204ENST00000585740 ARID3AQ99856 593 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 FUT8Q9BYC5 575 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 NFKBIZQ9BYH8 718 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 R3HDMLQ9H3Y0 253 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 SUGCTQ9HAC7 445 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 SLC5A4Q9NY91 659 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 NOCTQ9UK39 431 aaKnown RBP12.11□□□□□ -0.47
LIG3-204ENST00000585740 L1RE1Q9UN81 338 aa12.11□□□□□ -0.47
LIG3-204ENST00000585740 TMCO5BA8MYB1 307 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 MIF4GDA9UHW6 222 aaKnown RBP12.1□□□□□ -0.47
LIG3-204ENST00000585740 ZBTB42B2RXF5 422 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 CCDC188H7C350 402 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 PGRMC1O00264 195 aaKnown RBP12.1□□□□□ -0.47
LIG3-204ENST00000585740 TULP1O00294 542 aaPredicted RBP12.1□□□□□ -0.47
LIG3-204ENST00000585740 ACKR2O00590 384 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 KCNK3O14649 394 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 CYP26A1O43174 497 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 MSCO60682 206 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 PHACTR2O75167 634 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 FTLP02792 175 aaPredicted RBP12.1□□□□□ -0.47
LIG3-204ENST00000585740 CYP11B1P15538 503 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 ABCB4P21439 1286 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 MAPK4P31152 587 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 ACOT2P49753 483 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 FAM193AP78312 1265 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 POU5F1Q01860 360 aaKnown RBP12.1□□□□□ -0.47
LIG3-204ENST00000585740 MCL1Q07820 350 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 GRB14Q14449 540 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 PPP2R5EQ16537 467 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 FAM110CQ1W6H9 321 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 SPRYD7Q5W111 196 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 TAPT1Q6NXT6 567 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 C8orf74Q6P047 294 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 TRIM72Q6ZMU5 477 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 CTU1Q7Z7A3 348 aaKnown RBP12.1□□□□□ -0.47
LIG3-204ENST00000585740 USP38Q8NB14 1042 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 RNF149Q8NC42 400 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 PPTC7Q8NI37 304 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 BRI3BPQ8WY22 251 aa12.1□□□□□ -0.47
LIG3-204ENST00000585740 ZNF516Q92618 1163 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms