RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-225	ENST00000566824	PAAF1	Q9BRP4	392 aa		21.33	■■□□□ 1.01
CLN3-225	ENST00000566824	TMEM206	Q9H813	350 aa		21.33	■■□□□ 1.01
CLN3-225	ENST00000566824	CPSF3	Q9UKF6	684 aa	Known RBP	21.33	■■□□□ 1.01
CLN3-225	ENST00000566824	AGO2	Q9UKV8	859 aa	Known RBP	21.33	■■□□□ 1.01
CLN3-225	ENST00000566824	SMIM28	A0A1B0GU29	152 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	GOLGA8IP	A6NC78	632 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	GOLGA8J	A6NMD2	632 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	CLTA	P09496	248 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	LAG3	P18627	525 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	IGFBP6	P24592	240 aa	Predicted RBP	21.32	■■□□□ 1
CLN3-225	ENST00000566824	WNT7B	P56706	349 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	CAMK4	Q16566	473 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	ISM2	Q6H9L7	571 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	STXBP4	Q6ZWJ1	553 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	ELOA2	Q8IYF1	753 aa	Predicted RBP	21.32	■■□□□ 1
CLN3-225	ENST00000566824	SLC39A11	Q8N1S5	342 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	ZNF558	Q96NG5	402 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	PPP1R10	Q96QC0	940 aa	Known RBP	21.32	■■□□□ 1
CLN3-225	ENST00000566824	RPS6KC1	Q96S38	1066 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	KANSL3	Q9P2N6	904 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	UBE4B	O95155	1302 aa		21.32	■■□□□ 1
CLN3-225	ENST00000566824	LACTBL1	A8MY62	500 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	CLIC2	O15247	247 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	CSPG5	O95196	566 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	RB1	P06400	928 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	SOX4	Q06945	474 aa	Predicted RBP	21.31	■■□□□ 1
CLN3-225	ENST00000566824	GRIK3	Q13003	919 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	CAMK1	Q14012	370 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	SLFN12L	Q6IEE8	588 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	SPPL3	Q8TCT6	385 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	C18orf25	Q96B23	403 aa	Predicted RBP	21.31	■■□□□ 1
CLN3-225	ENST00000566824	KCTD10	Q9H3F6	313 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	GOLGA2P5	Q9HBQ8	144 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	AGPAT3	Q9NRZ7	376 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	MAN1B1	Q9UKM7	699 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	RWDD3	Q9Y3V2	267 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	PCDHB12	Q9Y5F1	795 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	REV3L	O60673	3130 aa		21.31	■■□□□ 1
CLN3-225	ENST00000566824	TTC26	A0AVF1	554 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	NRP1	O14786	923 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	FGF18	O76093	207 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	GART	P22102	1010 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	YARS	P54577	528 aa	Known RBP	21.3	■■□□□ 1
CLN3-225	ENST00000566824	KNOP1	Q1ED39	458 aa	Known RBP	21.3	■■□□□ 1
CLN3-225	ENST00000566824	P2RX5	Q93086	422 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	SMARCE1	Q969G3	411 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	FAM213A	Q9BRX8	229 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	PLVAP	Q9BX97	442 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	VN1R3	Q9BXE9	311 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	CNTN3	Q9P232	1028 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	PRG3	Q9Y2Y8	225 aa	Predicted RBP	21.3	■■□□□ 1
CLN3-225	ENST00000566824	PCDHGC5	Q9Y5F6	944 aa		21.3	■■□□□ 1
CLN3-225	ENST00000566824	CASTOR2	A6NHX0	329 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	SMC2	O95347	1197 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	TH	P07101	528 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	KCNE1	P15382	129 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	BMP6	P22004	513 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	IGFBP4	P22692	258 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	OR1G1	P47890	313 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	ARMCX5	Q6P1M9	558 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	RSPH1	Q8WYR4	309 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	CCDC47	Q96A33	483 aa	Known RBP	21.29	■■□□□ 1
CLN3-225	ENST00000566824	CCDC34	Q96HJ3	373 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	FAM84A	Q96KN4	292 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	FAM193B	Q96PV7	902 aa	Predicted RBP	21.29	■■□□□ 1
CLN3-225	ENST00000566824	GSDMA	Q96QA5	445 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	C11orf84	Q9BUA3	381 aa	Predicted RBP	21.29	■■□□□ 1
CLN3-225	ENST00000566824	AAAS	Q9NRG9	546 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	TOPORS	Q9NS56	1045 aa	Predicted RBP	21.29	■■□□□ 1
CLN3-225	ENST00000566824	MARCH5	Q9NX47	278 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	SPG21	Q9NZD8	308 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	MTCH2	Q9Y6C9	303 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	BIN1	O00499	593 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	ADRB2	P07550	413 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	ALDH7A1	P49419	539 aa	Known RBP	21.29	■■□□□ 1
CLN3-225	ENST00000566824	CYP2J2	P51589	502 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	TUSC3	Q13454	348 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	NOC3L	Q8WTT2	800 aa	Known RBP	21.29	■■□□□ 1
CLN3-225	ENST00000566824	FAM212A	Q96EL1	285 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	TMEM175	Q9BSA9	504 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	CLSTN2	Q9H4D0	955 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	RPF1	Q9H9Y2	349 aa	Known RBP	21.29	■■□□□ 1
CLN3-225	ENST00000566824	HSPBP1	Q9NZL4	362 aa		21.29	■■□□□ 1
CLN3-225	ENST00000566824	IRS1	P35568	1242 aa		21.28	■■□□□ 1
CLN3-225	ENST00000566824	GUCY2F	P51841	1108 aa		21.28	■■□□□ 1
CLN3-225	ENST00000566824	CBWD2	Q8IUF1	395 aa		21.28	■■□□□ 1
CLN3-225	ENST00000566824	POF1B	Q8WVV4	589 aa		21.28	■■□□□ 1
CLN3-225	ENST00000566824	IGSF21	Q96ID5	467 aa		21.28	■■□□□ 1
CLN3-225	ENST00000566824	TUBGCP4	Q9UGJ1	667 aa		21.28	■■□□□ 1
CLN3-225	ENST00000566824	HOOK1	Q9UJC3	728 aa	Known RBP	21.28	■■□□□ 1
CLN3-225	ENST00000566824	FAN1	Q9Y2M0	1017 aa		21.28	■■□□□ 1
CLN3-225	ENST00000566824	EXTL3	O43909	919 aa		21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	ALDH2	P05091	517 aa		21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	NFIC	P08651	508 aa		21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	FOSL2	P15408	326 aa		21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	CD44	P16070	742 aa	Known RBP	21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	PRCP	P42785	496 aa		21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	ERVFC1	P60507	584 aa		21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	PLCB3	Q01970	1234 aa		21.27	■□□□□ 0.99
CLN3-225	ENST00000566824	ZBTB6	Q15916	424 aa		21.27	■□□□□ 0.99

Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms