RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 KIF4AO95239 1232 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 PTENP60484 403 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 ELAVL2Q12926 359 aaKnown RBP18.7■□□□□ 0.58
CDH3-205ENST00000566808 TUSC3Q13454 348 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 SLC5A9Q2M3M2 681 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 CEP57Q86XR8 500 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 ZNF579Q8NAF0 562 aaKnown RBP18.7■□□□□ 0.58
CDH3-205ENST00000566808 TBCKQ8TEA7 893 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 HASPINQ8TF76 798 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 C22orf23Q9BZE7 217 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 CACNG4Q9UBN1 327 aa18.7■□□□□ 0.58
CDH3-205ENST00000566808 NAP1L2Q9ULW6 460 aaPredicted RBP18.7■□□□□ 0.58
CDH3-205ENST00000566808 CYP3A7-CYP3A51PA0A087WV96 503 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 ADAM12O43184 909 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 PRPF3O43395 683 aaKnown RBP18.69■□□□□ 0.58
CDH3-205ENST00000566808 TDP2O95551 362 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 RHOP08100 348 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 FCARP24071 287 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 CYP3A7P24462 503 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 AKAP5P24588 427 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 CXCL12P48061 93 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 SATB1Q01826 763 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 RAB33AQ14088 237 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 AASDHQ4L235 1098 aaPredicted RBP18.69■□□□□ 0.58
CDH3-205ENST00000566808 TANGO2Q6ICL3 276 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 IFNLR1Q8IU57 520 aaPredicted RBP18.69■□□□□ 0.58
CDH3-205ENST00000566808 FAM3CQ92520 227 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 IRF7Q92985 503 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 MCRS1Q96EZ8 462 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 PAAF1Q9BRP4 392 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 ANO2Q9NQ90 1003 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 TRPV5Q9NQA5 729 aa18.69■□□□□ 0.58
CDH3-205ENST00000566808 BMP2KQ9NSY1 1161 aaPredicted RBP18.69■□□□□ 0.58
CDH3-205ENST00000566808 INO80B-WBP1J3KQ70 363 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 HRO43593 1189 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 PAPSS2O95340 614 aaPredicted RBP18.68■□□□□ 0.58
CDH3-205ENST00000566808 CEBPBP17676 345 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 ARF4P18085 180 aaPredicted RBP18.68■□□□□ 0.58
CDH3-205ENST00000566808 AKAP17AQ02040 695 aaKnown RBP18.68■□□□□ 0.58
CDH3-205ENST00000566808 GRM2Q14416 872 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 MXD4Q14582 209 aaPredicted RBP18.68■□□□□ 0.58
CDH3-205ENST00000566808 AMHR2Q16671 573 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 SLC27A1Q6PCB7 646 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 MOXD1Q6UVY6 613 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.68■□□□□ 0.58
CDH3-205ENST00000566808 LONP2Q86WA8 852 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 ESYT1Q9BSJ8 1104 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 LMAN1LQ9HAT1 526 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 PIAS3Q9Y6X2 628 aa18.68■□□□□ 0.58
CDH3-205ENST00000566808 SETXQ7Z333 2677 aaKnown RBP18.67■□□□□ 0.58
CDH3-205ENST00000566808 CASTOR2A6NHX0 329 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 CHURC1-FNTBB4DL54 471 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 EML1O00423 815 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 TM4SF5O14894 197 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 OR1D2P34982 312 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 FNTBP49356 437 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 MBTD1Q05BQ5 628 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 PPP2R5CQ13362 524 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 TFDP1Q14186 410 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 SPEM1Q8N4L4 309 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 FAM160A2Q8N612 972 aaPredicted RBP18.67■□□□□ 0.58
CDH3-205ENST00000566808 C12orf50Q8NA57 414 aaPredicted RBP18.67■□□□□ 0.58
CDH3-205ENST00000566808 MTRQ99707 1265 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 TRMT61BQ9BVS5 477 aaKnown RBP18.67■□□□□ 0.58
CDH3-205ENST00000566808 ZFP14Q9HCL3 533 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 KLK14Q9P0G3 267 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 VPS54Q9P1Q0 977 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 NBEAQ8NFP9 2946 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 AKAP13Q12802 2813 aa18.67■□□□□ 0.58
CDH3-205ENST00000566808 NPTXRO95502 500 aa18.66■□□□□ 0.58
CDH3-205ENST00000566808 P4HBP07237 508 aaKnown RBP18.66■□□□□ 0.58
CDH3-205ENST00000566808 POU5F1BQ06416 359 aa18.66■□□□□ 0.58
CDH3-205ENST00000566808 SRSF5Q13243 272 aaKnown RBP18.66■□□□□ 0.58
CDH3-205ENST00000566808 MAP4K3Q8IVH8 894 aa18.66■□□□□ 0.58
CDH3-205ENST00000566808 RNF26Q9BY78 433 aaPredicted RBP18.66■□□□□ 0.58
CDH3-205ENST00000566808 WRAP73Q9P2S5 460 aaPredicted RBP18.66■□□□□ 0.58
CDH3-205ENST00000566808 MTRRQ9UBK8 725 aa18.66■□□□□ 0.58
CDH3-205ENST00000566808 PARP2Q9UGN5 583 aa18.66■□□□□ 0.58
CDH3-205ENST00000566808 VAV3Q9UKW4 847 aa18.66■□□□□ 0.58
CDH3-205ENST00000566808 ITPR1Q14643 2758 aa18.66■□□□□ 0.58
CDH3-205ENST00000566808 GCN1Q92616 2671 aaKnown RBP18.65■□□□□ 0.58
CDH3-205ENST00000566808 CHRNB1P11230 501 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 HOXB3P14651 431 aaPredicted RBP18.65■□□□□ 0.58
CDH3-205ENST00000566808 YWHABP31946 246 aaKnown RBP18.65■□□□□ 0.58
CDH3-205ENST00000566808 LRRC32Q14392 662 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 GAS6Q14393 721 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 FAM78AQ5JUQ0 283 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 C1orf228Q6PIY5 440 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 UNQ6494/PRO21346Q6UXR6 183 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 CEP68Q76N32 757 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 OTUD6AQ7L8S5 288 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 C4orf19Q8IY42 314 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 MSANTD3Q96H12 275 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 LXNQ9BS40 222 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 NFKBIZQ9BYH8 718 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 ZNF334Q9HCZ1 680 aaPredicted RBP18.65■□□□□ 0.58
CDH3-205ENST00000566808 SH3GLB2Q9NR46 395 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 DDX25Q9UHL0 483 aaKnown RBP18.65■□□□□ 0.58
CDH3-205ENST00000566808 WDFY3Q8IZQ1 3526 aa18.65■□□□□ 0.58
CDH3-205ENST00000566808 K7ESF4 209 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms