RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 KRT17Q04695 432 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 TUSC3Q13454 348 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 CAMK1Q14012 370 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 NAB2Q15742 525 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 BMT2Q1RMZ1 405 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 SEZ6Q53EL9 994 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 TIGD5Q53EQ6 642 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 TMEM173Q86WV6 379 aaPredicted RBP18.24■□□□□ 0.51
CLK3-207ENST00000562389 TMEM169Q96HH4 297 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 IGSF21Q96ID5 467 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 PPP1R10Q96QC0 940 aaKnown RBP18.24■□□□□ 0.51
CLK3-207ENST00000562389 SLC39A2Q9NP94 309 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 AGO2Q9UKV8 859 aaKnown RBP18.24■□□□□ 0.51
CLK3-207ENST00000562389 FAN1Q9Y2M0 1017 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 ANK1P16157 1881 aa18.24■□□□□ 0.51
CLK3-207ENST00000562389 NRP1O14786 923 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 MEFVO15553 781 aaPredicted RBP18.23■□□□□ 0.51
CLK3-207ENST00000562389 NR1I2O75469 434 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 KCNE1P15382 129 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 GARTP22102 1010 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 HOXD13P35453 343 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 TNFSF9P41273 254 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 OR1G1P47890 313 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 UBE2HP62256 183 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 SLC10A6Q3KNW5 377 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 ZBTB41Q5SVQ8 909 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 ELOA2Q8IYF1 753 aaPredicted RBP18.23■□□□□ 0.51
CLK3-207ENST00000562389 SCFD1Q8WVM8 642 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 POMGNT1Q8WZA1 660 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 CCDC47Q96A33 483 aaKnown RBP18.23■□□□□ 0.51
CLK3-207ENST00000562389 PLEKHA5Q9HAU0 1116 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 TLR9Q9NR96 1032 aa18.23■□□□□ 0.51
CLK3-207ENST00000562389 PUF60Q9UHX1 559 aaKnown RBP18.23■□□□□ 0.51
CLK3-207ENST00000562389 CPSF3Q9UKF6 684 aaKnown RBP18.23■□□□□ 0.51
CLK3-207ENST00000562389 SMIM28A0A1B0GU29 152 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 TTC26A0AVF1 554 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 FSCN2O14926 492 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 RHOBTB3O94955 611 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 ADRB2P07550 413 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 CXCL8P10145 99 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 POU5F1Q01860 360 aaKnown RBP18.22■□□□□ 0.51
CLK3-207ENST00000562389 STK4Q13043 487 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 KCNB1Q14721 858 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 GLRA4Q5JXX5 417 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 DDX53Q86TM3 631 aaKnown RBP18.22■□□□□ 0.51
CLK3-207ENST00000562389 MICALL1Q8N3F8 863 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 KIAA0895Q8NCT3 520 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 BCL7CQ8WUZ0 217 aaPredicted RBP18.22■□□□□ 0.51
CLK3-207ENST00000562389 NSUN3Q9H649 340 aaKnown RBP18.22■□□□□ 0.51
CLK3-207ENST00000562389 RPF1Q9H9Y2 349 aaKnown RBP18.22■□□□□ 0.51
CLK3-207ENST00000562389 SLC38A7Q9NVC3 462 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 MARCH5Q9NX47 278 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 STK39Q9UEW8 545 aa18.22■□□□□ 0.51
CLK3-207ENST00000562389 KIAA0391O15091 583 aaKnown RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 KINO60870 393 aaKnown RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 SNRPFP62306 86 aaKnown RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 PPP2R3AQ06190 1150 aa18.21■□□□□ 0.51
CLK3-207ENST00000562389 PNOCQ13519 176 aa18.21■□□□□ 0.51
CLK3-207ENST00000562389 ENOX2Q16206 610 aaKnown RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 PDE12Q6L8Q7 609 aaKnown RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 ZMAT2Q96NC0 199 aaKnown RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 TSPAN18Q96SJ8 248 aa18.21■□□□□ 0.51
CLK3-207ENST00000562389 COLEC11Q9BWP8 271 aa18.21■□□□□ 0.51
CLK3-207ENST00000562389 HOOK1Q9UJC3 728 aaKnown RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 PRG3Q9Y2Y8 225 aaPredicted RBP18.21■□□□□ 0.51
CLK3-207ENST00000562389 CASTOR2A6NHX0 329 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 TGFB1I1O43294 461 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 LDHAP00338 332 aaKnown RBP18.2■□□□□ 0.5
CLK3-207ENST00000562389 IRS1P35568 1242 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 ACOT2P49753 483 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 ERVFC1P60507 584 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 HSP90AA2PQ14568 343 aaPredicted RBP18.2■□□□□ 0.5
CLK3-207ENST00000562389 KNOP1Q1ED39 458 aaKnown RBP18.2■□□□□ 0.5
CLK3-207ENST00000562389 ARMCX5Q6P1M9 558 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 CD302Q8IX05 232 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 NELFCDQ8IXH7 590 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 UROC1Q96N76 676 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 CBWD1Q9BRT8 395 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.2■□□□□ 0.5
CLK3-207ENST00000562389 TRANK1O15050 2925 aa18.2■□□□□ 0.5
CLK3-207ENST00000562389 LACTBL1A8MY62 500 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 PRPF40AO75400 957 aaKnown RBP18.19■□□□□ 0.5
CLK3-207ENST00000562389 CSPG5O95196 566 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 EFEMP2O95967 443 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 CCDC85BQ15834 202 aaPredicted RBP18.19■□□□□ 0.5
CLK3-207ENST00000562389 CRELD2Q6UXH1 353 aaPredicted RBP18.19■□□□□ 0.5
CLK3-207ENST00000562389 RNF168Q8IYW5 571 aaPredicted RBP18.19■□□□□ 0.5
CLK3-207ENST00000562389 PPM1EQ8WY54 764 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 TCF25Q9BQ70 676 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 PAAF1Q9BRP4 392 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 VN1R3Q9BXE9 311 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 ZBP1Q9H171 429 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 NGRNQ9NPE2 291 aaKnown RBP18.19■□□□□ 0.5
CLK3-207ENST00000562389 ENTPD7Q9NQZ7 604 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 AGPAT3Q9NRZ7 376 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 CGNQ9P2M7 1197 aaKnown RBP18.19■□□□□ 0.5
CLK3-207ENST00000562389 CACNG4Q9UBN1 327 aa18.19■□□□□ 0.5
CLK3-207ENST00000562389 MYO7AQ13402 2215 aa18.18■□□□□ 0.5
CLK3-207ENST00000562389 F8W810 466 aa18.18■□□□□ 0.5
CLK3-207ENST00000562389 TMEM189-UBE2V1I3L0A0 370 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms