RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 GSDMAQ96QA5 445 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 HAPLN2Q9GZV7 340 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 KLK14Q9P0G3 267 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 PUF60Q9UHX1 559 aaKnown RBP14.18□□□□□ -0.14
NEDD8-208ENST00000560427 AGO2Q9UKV8 859 aaKnown RBP14.18□□□□□ -0.14
NEDD8-208ENST00000560427 CHD9Q3L8U1 2897 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 ANKRD63C9JTQ0 380 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 GOLGA6L22H0YM25 854 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 PRPF40AO75400 957 aaKnown RBP14.17□□□□□ -0.14
NEDD8-208ENST00000560427 DDHD2O94830 711 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 ALDH2P05091 517 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 ADRB2P07550 413 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 ADSSP30520 456 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 SLC11A1P49279 550 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 OSTNP61366 133 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 PPP2R3AQ06190 1150 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 STK4Q13043 487 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 KNOP1Q1ED39 458 aaKnown RBP14.17□□□□□ -0.14
NEDD8-208ENST00000560427 KIAA0895Q8NCT3 520 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 GLIS3Q8NEA6 775 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 SPATA20Q8TB22 786 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 UROC1Q96N76 676 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 PPP1R10Q96QC0 940 aaKnown RBP14.17□□□□□ -0.14
NEDD8-208ENST00000560427 RPF1Q9H9Y2 349 aaKnown RBP14.17□□□□□ -0.14
NEDD8-208ENST00000560427 SLC39A2Q9NP94 309 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 MIOSQ9NXC5 875 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 DNAJB4Q9UDY4 337 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 CPSF3Q9UKF6 684 aaKnown RBP14.17□□□□□ -0.14
NEDD8-208ENST00000560427 MTCH2Q9Y6C9 303 aa14.17□□□□□ -0.14
NEDD8-208ENST00000560427 SMIM28A0A1B0GU29 152 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 TTC26A0AVF1 554 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 RFXAPO00287 272 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 GRM6O15303 877 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 CXCL8P10145 99 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 IGFBP4P22692 258 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 BMS1Q14692 1282 aaKnown RBP14.16□□□□□ -0.14
NEDD8-208ENST00000560427 NAB2Q15742 525 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 SLC10A6Q3KNW5 377 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 ARMCX5Q6P1M9 558 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 C12orf56Q8IXR9 622 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 SPPL3Q8TCT6 385 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 TMEM174Q8WUU8 243 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 POF1BQ8WVV4 589 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 SMARCE1Q969G3 411 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 IGSF21Q96ID5 467 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 ASB7Q9H672 318 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 KIAA1586Q9HCI6 787 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 FAN1Q9Y2M0 1017 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 DERAQ9Y315 318 aa14.16□□□□□ -0.14
NEDD8-208ENST00000560427 FSD2A1L4K1 749 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 TISP43B9A030 160 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 TMEM189-UBE2V1I3L0A0 370 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 NRP1O14786 923 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 TGFB1I1O43294 461 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 XPOTO43592 962 aaKnown RBP14.15□□□□□ -0.14
NEDD8-208ENST00000560427 EXTL3O43909 919 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 B4GALT3O60512 393 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 HOXD13P35453 343 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 PBX3P40426 434 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 OR1G1P47890 313 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 PNOCQ13519 176 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 ENOX2Q16206 610 aaKnown RBP14.15□□□□□ -0.14
NEDD8-208ENST00000560427 COBLL1Q53SF7 1204 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 DDX53Q86TM3 631 aaKnown RBP14.15□□□□□ -0.14
NEDD8-208ENST00000560427 NT5DC4Q86YG4 428 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 GUF1Q8N442 669 aaKnown RBP14.15□□□□□ -0.14
NEDD8-208ENST00000560427 PPP2R3CQ969Q6 453 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 DDX27Q96GQ7 796 aaKnown RBP14.15□□□□□ -0.14
NEDD8-208ENST00000560427 COLEC11Q9BWP8 271 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 ALG13Q9NP73 1137 aaKnown RBP14.15□□□□□ -0.14
NEDD8-208ENST00000560427 NGRNQ9NPE2 291 aaKnown RBP14.15□□□□□ -0.14
NEDD8-208ENST00000560427 TLR9Q9NR96 1032 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 AGPAT3Q9NRZ7 376 aa14.15□□□□□ -0.14
NEDD8-208ENST00000560427 TDRD15B5MCY1 1934 aaKnown RBP14.14□□□□□ -0.15
NEDD8-208ENST00000560427 IL18RAPO95256 599 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 CYP3A5P20815 502 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 PPP1R2P41236 205 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 TNFSF9P41273 254 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 MYBPC2Q14324 1141 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 SEZ6Q53EL9 994 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 GLRA4Q5JXX5 417 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 ZBTB41Q5SVQ8 909 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 TMEM173Q86WV6 379 aaPredicted RBP14.14□□□□□ -0.15
NEDD8-208ENST00000560427 BRSK2Q8IWQ3 736 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 NELFCDQ8IXH7 590 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 GPD1LQ8N335 351 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 MAFAQ8NHW3 353 aaPredicted RBP14.14□□□□□ -0.15
NEDD8-208ENST00000560427 CBWD1Q9BRT8 395 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 IKZF4Q9H2S9 585 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 NSUN3Q9H649 340 aaKnown RBP14.14□□□□□ -0.15
NEDD8-208ENST00000560427 MARCH5Q9NX47 278 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 UBQLN1Q9UMX0 589 aaKnown RBP14.14□□□□□ -0.15
NEDD8-208ENST00000560427 C2CD2Q9Y426 696 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 PCDHA5Q9Y5H7 936 aa14.14□□□□□ -0.15
NEDD8-208ENST00000560427 SF3B1O75533 1304 aaKnown RBP eCLIP14.14□□□□□ -0.154e-7■■■■■ 86.2
NEDD8-208ENST00000560427 NT5C1B-RDH14C9J2C7 533 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 PDXKO00764 312 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 FSCN2O14926 492 aa14.13□□□□□ -0.15
NEDD8-208ENST00000560427 MEFVO15553 781 aaPredicted RBP14.13□□□□□ -0.15
NEDD8-208ENST00000560427 RPL9P32969 192 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms