RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LIG1P18858 919 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 RPA1P27694 616 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 RBM25P49756 843 aaKnown RBP10.11□□□□□ -0.79
HDDC3-204ENST00000559834 NEK4P51957 841 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 STARD6P59095 220 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 GPC5P78333 572 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 PFKPQ01813 784 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 ORC2Q13416 577 aaPredicted RBP10.11□□□□□ -0.79
HDDC3-204ENST00000559834 RAB33AQ14088 237 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 DCAF4L1Q3SXM0 396 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 SPECC1Q5M775 1068 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.11□□□□□ -0.79
HDDC3-204ENST00000559834 NOSTRINQ8IVI9 506 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 C1orf210Q8IVY1 113 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 PAAF1Q9BRP4 392 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 TMEM60Q9H2L4 133 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 KCNH3Q9ULD8 1083 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 STK24Q9Y6E0 443 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 C2orf16Q68DN1 1984 aa10.11□□□□□ -0.79
HDDC3-204ENST00000559834 TDRD15B5MCY1 1934 aaKnown RBP10.11□□□□□ -0.79
HDDC3-204ENST00000559834 MTCL1Q9Y4B5 1905 aaKnown RBP10.1□□□□□ -0.79
HDDC3-204ENST00000559834 TMEM189-UBE2V1I3L0A0 370 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 K7ERI5 159 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 PTGESO14684 152 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 MED24O75448 989 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 POU2F2P09086 479 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 OR52Z1P0C646 297 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 OR1D2P34982 312 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 FOSBP53539 338 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 PRKCQQ04759 706 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 ZNF174Q15697 407 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 SLC44A4Q53GD3 710 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 AXDND1Q5T1B0 1012 aaPredicted RBP10.1□□□□□ -0.79
HDDC3-204ENST00000559834 HAUS3Q68CZ6 603 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 PARM1Q6UWI2 310 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 RSPO2Q6UXX9 243 aaPredicted RBP10.1□□□□□ -0.79
HDDC3-204ENST00000559834 ANKS3Q6ZW76 656 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 KIFAP3Q92845 792 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 FGF13Q92913 245 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 DDX27Q96GQ7 796 aaKnown RBP10.1□□□□□ -0.79
HDDC3-204ENST00000559834 UROC1Q96N76 676 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 NELL2Q99435 816 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 RPP25Q9BUL9 199 aaKnown RBP10.1□□□□□ -0.79
HDDC3-204ENST00000559834 BCO2Q9BYV7 579 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 OSBPL6Q9BZF3 934 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 CACNG4Q9UBN1 327 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 GDAQ9Y2T3 454 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 BACE2Q9Y5Z0 518 aa10.1□□□□□ -0.79
HDDC3-204ENST00000559834 KANSL1LA0AUZ9 987 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 TTLL13PA6NNM8 815 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 WNT7AO00755 349 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 NCAM2O15394 837 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 CCL16O15467 120 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 JAK2O60674 1132 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 NEFLP07196 543 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 SP9P0CG40 484 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 FGFR3P22607 806 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 ELF1P32519 619 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 YARSP54577 528 aaKnown RBP10.09□□□□□ -0.79
HDDC3-204ENST00000559834 NTHL1P78549 312 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 SNW1Q13573 536 aaKnown RBP10.09□□□□□ -0.79
HDDC3-204ENST00000559834 GNL2Q13823 731 aaKnown RBP10.09□□□□□ -0.79
HDDC3-204ENST00000559834 PABPC1LQ4VXU2 614 aaKnown RBP10.09□□□□□ -0.79
HDDC3-204ENST00000559834 ATF7IP2Q5U623 682 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 POTEGQ6S5H5 508 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 PJA1Q8NG27 643 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 SLC7A14Q8TBB6 771 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 BSNDQ8WZ55 320 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 FGF14Q92915 247 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 C8orf76Q96K31 380 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 HINFPQ9BQA5 517 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 CCDC94Q9BW85 323 aaPredicted RBP10.09□□□□□ -0.79
HDDC3-204ENST00000559834 CCDC113Q9H0I3 377 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 FOXP1Q9H334 677 aaPredicted RBP10.09□□□□□ -0.79
HDDC3-204ENST00000559834 TOPORSQ9NS56 1045 aaPredicted RBP10.09□□□□□ -0.79
HDDC3-204ENST00000559834 SLC38A7Q9NVC3 462 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 DLGAP2Q9P1A6 1054 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 MTRRQ9UBK8 725 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 TNFSF13BQ9Y275 285 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 R4GN57 208 aa10.09□□□□□ -0.79
HDDC3-204ENST00000559834 PHLPP2Q6ZVD8 1323 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 FAM170BA6NMN3 283 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 ADAM12O43184 909 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 LAMTOR5O43504 91 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 LARGE1O95461 756 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 PTPN2P17706 415 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 CCT6AP40227 531 aaKnown RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 MAGEA9P43362 315 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 CLCNKBP51801 687 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 PDIA5Q14554 519 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 NAB2Q15742 525 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 MLF2Q15773 248 aaPredicted RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 UPP1Q16831 310 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 ZNF528Q3MIS6 628 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 EEF1DP3Q658K8 133 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 ST13P5Q8NFI4 369 aaPredicted RBP10.08□□□□□ -0.8
HDDC3-204ENST00000559834 ZNF461Q8TAF7 563 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 ITFG1Q8TB96 612 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 RUBCNQ92622 972 aa10.08□□□□□ -0.8
HDDC3-204ENST00000559834 PPP1R10Q96QC0 940 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms