RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 HIST1H2AHQ96KK5 128 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 FAM193BQ96PV7 902 aaPredicted RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 DMRTA2Q96SC8 542 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 STRBPQ96SI9 672 aaKnown RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 TMEM209Q96SK2 561 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ADOQ96SZ5 270 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 HIST1H2AJQ99878 128 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ADI1Q9BV57 179 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 TMEM60Q9H2L4 133 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 MYH16Q9H6N6 1097 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 GREM2Q9H772 168 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 ARMT1Q9H993 441 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 RSAD1Q9HA92 442 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 PTPRHQ9HD43 1115 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 JADE2Q9NQC1 790 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 TLR9Q9NR96 1032 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 POLR3BQ9NW08 1133 aaPredicted RBP2.08□□□□□ -2.08
USP3-209ENST00000558925 SIK3Q9Y2K2 1263 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 PCDHB1Q9Y5F3 818 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 DMRT1Q9Y5R6 373 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 COMMD10Q9Y6G5 202 aa2.08□□□□□ -2.08
USP3-209ENST00000558925 A0A1W2PR48 441 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 ANO9A1A5B4 782 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 FAM227AF5H4B4 570 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 PRAMEF4O60810 478 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 CUTAO60888 179 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 DTNBO60941 627 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 KNG1P01042 644 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 FTLP02792 175 aaPredicted RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 CYP1A1P04798 512 aaPredicted RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 GAAP10253 952 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 FPR1P21462 350 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 XPAP23025 273 aaPredicted RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 CTSSP25774 331 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 PEX2P28328 305 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 PIK3CBP42338 1070 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 WASP42768 502 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 TRAPPC10P48553 1259 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 GPR15P49685 360 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 ALDH5A1P51649 535 aaPredicted RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 KCNQ1P51787 676 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 OS9Q13438 667 aaPredicted RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 ADAM15Q13444 863 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 SEMA5AQ13591 1074 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 UBE3CQ15386 1083 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 CNN3Q15417 329 aaKnown RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 ANO4Q32M45 955 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 ERAP2Q6P179 960 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 KLHDC10Q6PID8 442 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 APOA5Q6Q788 366 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 MIGA2Q7L4E1 593 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 SRLQ86TD4 932 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 RHOT1Q8IXI2 618 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 SMC5Q8IY18 1101 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 ZGPATQ8N5A5 531 aaKnown RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 SH2D3CQ8N5H7 860 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 LILRA3Q8N6C8 439 aaPredicted RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 TTLL6Q8N841 843 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 REPS2Q8NFH8 660 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 NUDT10Q8NFP7 164 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 PPP1R14CQ8TAE6 165 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 WDR48Q8TAF3 677 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 KLHDC4Q8TBB5 520 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 NSUN6Q8TEA1 469 aaKnown RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 RSAD2Q8WXG1 361 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 FATE1Q969F0 183 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 GJA10Q969M2 543 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 TTC17Q96AE7 1141 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 EVI5LQ96CN4 794 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 IL17RAQ96F46 866 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 NUDT11Q96G61 164 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 TBCBQ99426 244 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 VRK1Q99986 396 aaPredicted RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 C7orf25Q9BPX7 421 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 ELAC2Q9BQ52 826 aaKnown RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 C22orf23Q9BZE7 217 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 KIAA1683Q9H0B3 1180 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 ZNF700Q9H0M5 742 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 FAM204AQ9H8W3 233 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 C14orf93Q9H972 538 aaKnown RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 ZMAT3Q9HA38 289 aaKnown RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 ATP6V0A4Q9HBG4 840 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 RBM12Q9NTZ6 932 aaKnown RBP2.07□□□□□ -2.08
USP3-209ENST00000558925 L1RE1Q9UN81 338 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 CORO2BQ9UQ03 480 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 STXBP5LQ9Y2K9 1186 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 PCDHA3Q9Y5H8 950 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 USP19O94966 1318 aa2.07□□□□□ -2.08
USP3-209ENST00000558925 A0A0G2JNJ9 132 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 C2orf78A6NCI8 922 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 KPNA5O15131 536 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 NCK2O43639 380 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 NRP2O60462 931 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 PPFIA2O75334 1257 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 MAFO75444 373 aaPredicted RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 AMY1AP04745 511 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 LTA4HP09960 611 aaKnown RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 ZNF888P0CJ79 500 aaPredicted RBP2.06□□□□□ -2.08
USP3-209ENST00000558925 KITP10721 976 aa2.06□□□□□ -2.08
USP3-209ENST00000558925 PHKG2P15735 406 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms