RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TRIM33Q9UPN9 1127 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 ZHX2Q9Y6X8 837 aa11.64□□□□□ -0.55
USP3-206ENST00000558157 RPTORQ8N122 1335 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 DCAF8L1A6NGE4 600 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 DCTN3O75935 186 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 FCER1AP12319 257 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 PLCG1P19174 1290 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 ABCD1P33897 745 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 IREB2P48200 963 aaKnown RBP11.63□□□□□ -0.55
USP3-206ENST00000558157 POLGP54098 1239 aaPredicted RBP11.63□□□□□ -0.55
USP3-206ENST00000558157 CACNA2D1P54289 1103 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 FOXB2Q5VYV0 432 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 CABP7Q86V35 215 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 BLIDQ8IZY5 108 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 DAGLBQ8NCG7 672 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 ZNF280CQ8ND82 737 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 RASGRP4Q8TDF6 673 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 LRRC8CQ8TDW0 803 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 RMDN2Q96LZ7 410 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 IWS1Q96ST2 819 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 PACSIN1Q9BY11 444 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 CELF4Q9BZC1 486 aaKnown RBP11.63□□□□□ -0.55
USP3-206ENST00000558157 NMRK1Q9NWW6 199 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 IL1RAPL1Q9NZN1 696 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 PARP14Q460N5 1801 aa11.63□□□□□ -0.55
USP3-206ENST00000558157 TRAF5O00463 557 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 WDR46O15213 610 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 NKRFO15226 690 aaKnown RBP eCLIP11.62□□□□□ -0.556e-7■■□□□ 13.1
USP3-206ENST00000558157 RIPK2O43353 540 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 CCDC166P0CW27 439 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 TAL1P17542 331 aaPredicted RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 POLR2FP61218 127 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 TTLL12Q14166 644 aaPredicted RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 GALNT17Q6IS24 598 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 CHADLQ6NUI6 762 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 ZDHHC24Q6UX98 284 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 UNC13DQ70J99 1090 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 TRMT10CQ7L0Y3 403 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 NT5DC3Q86UY8 548 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 LONP2Q86WA8 852 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 VSIG1Q86XK7 387 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 ZNF526Q8TF50 670 aaPredicted RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 LPAR1Q92633 364 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 DDX23Q9BUQ8 820 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 TANGO6Q9C0B7 1094 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 CARD9Q9H257 536 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 EMILIN3Q9NT22 766 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 FBXO28Q9NVF7 368 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 COL4A3BPQ9Y5P4 624 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 PTPRFP10586 1907 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 TMEM120BA0PK00 339 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 SMCO2A6NFE2 343 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 EIF4E1BA6NMX2 242 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 KIAA0391O15091 583 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 MAPK13O15264 365 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 DESP17661 470 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 VCAM1P19320 739 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 MARSP56192 900 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 BACE1P56817 501 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 USP4Q13107 963 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 MAPK7Q13164 816 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 RAPGEF1Q13905 1077 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 RCN2Q14257 317 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 PPP1R18Q6NYC8 613 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 ARHGEF18Q6ZSZ5 1173 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 ZNF365Q70YC5 407 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 ECHDC2Q86YB7 292 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 CEP63Q96MT8 703 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 TRIM51Q9BSJ1 452 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 LSM14BQ9BX40 385 aaKnown RBP11.62□□□□□ -0.55
USP3-206ENST00000558157 NMRK2Q9NPI5 230 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 AMFRQ9UKV5 643 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 STARD13Q9Y3M8 1113 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 CSADQ9Y600 493 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 USH1CQ9Y6N9 552 aa11.62□□□□□ -0.55
USP3-206ENST00000558157 ESYT2A0FGR8 921 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 M0R2N6 131 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 GM2AP17900 193 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 HMGCS2P54868 508 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 FKBP3Q00688 224 aaKnown RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 SF3A3Q12874 501 aaKnown RBP eCLIP11.61□□□□□ -0.551e-7■■■■□ 19.8
USP3-206ENST00000558157 ENOX2Q16206 610 aaKnown RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 PPP1R21Q6ZMI0 780 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 FAM160B2Q86V87 743 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 SMC1BQ8NDV3 1235 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 CLMNQ96JQ2 1002 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 LRRC37BQ96QE4 947 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 TGS1Q96RS0 853 aaKnown RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 LRRC27Q9C0I9 530 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 ELP3Q9H9T3 547 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 METTL14Q9HCE5 456 aaKnown RBP11.61□□□□□ -0.55
USP3-206ENST00000558157 C6orf50Q9HD87 102 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 GALNT8Q9NY28 637 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 NAGPAQ9UK23 515 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 FEM1BQ9UK73 627 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 PLA2G6O60733 806 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 GFPT2O94808 682 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 FGGP02679 453 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 MARK3P27448 753 aa11.61□□□□□ -0.55
USP3-206ENST00000558157 PRKCIP41743 596 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms