RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 ZNF662Q6ZS27 426 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 NLRP9Q7RTR0 991 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 GPR141Q7Z602 305 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 C1orf131Q8NDD1 294 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 CASKIN2Q8WXE0 1202 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 ZNF577Q9BSK1 485 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 MRPL1Q9BYD6 325 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 ASPSCR1Q9BZE9 553 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 RHBDL2Q9NX52 303 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 COMMD3-BMI1R4GMX3 469 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 KANSL1LA0AUZ9 987 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 M0R3G1 203 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 UBTFL6P0CB48 400 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 GALCP54803 685 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 IL1RL1Q01638 556 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 DCTN2Q13561 401 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 TXNRD1Q16881 649 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 KIF19Q2TAC6 998 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 GLYCTKQ8IVS8 523 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 LCORLQ8N3X6 602 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 RPS6KC1Q96S38 1066 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 PRPF18Q99633 342 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 COPG1Q9Y678 874 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 DYTNA2CJ06 578 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 FOXN1O15353 648 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 GOLGA8HP0CJ92 632 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 HMOX2P30519 316 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 COPAP53621 1224 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 CHRNDQ07001 517 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 CDKAL1Q5VV42 579 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 EML4Q9HC35 981 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 GPHNQ9NQX3 736 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 AGPAT5Q9NUQ2 364 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 BARHL2Q9NY43 387 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 BFARQ9NZS9 450 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 UBOX5O94941 541 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SNRPAP09012 282 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 ZNF18P17022 549 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SKIV2L2P42285 1042 aaKnown RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 AP3M2P53677 418 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 CCDC15Q0P6D6 951 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 KBTBD12Q3ZCT8 623 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 TBC1D10CQ8IV04 446 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SLC7A3Q8WY07 619 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 MS4A14Q96JA4 679 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SIKE1Q9BRV8 207 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 TIPINQ9BVW5 301 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 MANSC1Q9H8J5 431 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 DMAP1Q9NPF5 467 aaPredicted RBP13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SEPT10Q9P0V9 454 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SAC3D1A6NKF1 404 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 F8W8V4 182 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 UCHL3P15374 230 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 DYNLT1P63172 113 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 KSR1Q8IVT5 923 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 TTC16Q8NEE8 873 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ZNF555Q8NEP9 628 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ATP6V1E2Q96A05 226 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 PUS3Q9BZE2 481 aaKnown RBP13.49□□□□□ -0.25
PTCH1-212ENST00000546744 BHMT2Q9H2M3 363 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ABCF3Q9NUQ8 709 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ZNF446Q9NWS9 450 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 THRAP3Q9Y2W1 955 aaKnown RBP13.49□□□□□ -0.25
PTCH1-212ENST00000546744 CDC27P30260 824 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 FAM160B1Q5W0V3 765 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 PIGSQ96S52 555 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 VPS33BQ9H267 617 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 SLC24A2Q9UI40 661 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 PHTF1Q9UMS5 762 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 GOLGA8SH3BPF8 625 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 TYK2P29597 1187 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 MAGEA4P43358 317 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ARSEP51690 589 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 TBX2Q13207 712 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-212ENST00000546744 LONRF1Q17RB8 773 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 MCUQ8NE86 351 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 TNIP2Q8NFZ5 429 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 FAM81AQ8TBF8 368 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 TRIM51Q9BSJ1 452 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 PHF20Q9BVI0 1012 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ANO3Q9BYT9 981 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 GREM2Q9H772 168 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 RNPEPL1Q9HAU8 725 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 SLC38A10Q9HBR0 1119 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 PARVAQ9NVD7 372 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 GRID1Q9ULK0 1009 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ZMYND8Q9ULU4 1186 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-212ENST00000546744 CHMP2BQ9UQN3 213 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 DLG5Q8TDM6 1919 aa13.49□□□□□ -0.25
PTCH1-212ENST00000546744 ERVV-1B6SEH8 477 aa13.48□□□□□ -0.25
PTCH1-212ENST00000546744 PLEKHA8P1O95397 391 aa13.48□□□□□ -0.25
PTCH1-212ENST00000546744 ATICP31939 592 aa13.48□□□□□ -0.25
PTCH1-212ENST00000546744 PPARGP37231 505 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-212ENST00000546744 SNRPFP62306 86 aaKnown RBP13.48□□□□□ -0.25
PTCH1-212ENST00000546744 ERVK-24P63145 666 aa13.48□□□□□ -0.25
PTCH1-212ENST00000546744 GRM4Q14833 912 aa13.48□□□□□ -0.25
PTCH1-212ENST00000546744 UGP2Q16851 508 aa13.48□□□□□ -0.25
PTCH1-212ENST00000546744 DPP8Q6V1X1 898 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-212ENST00000546744 MCPH1Q8NEM0 835 aa13.48□□□□□ -0.25
PTCH1-212ENST00000546744 OR2W6PQ8NHA6 318 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms