RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 WDR81Q562E7 1941 aa17.23■□□□□ 0.35
CLSTN3-216ENST00000545663 MAFO75444 373 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 CAPNS1P04632 268 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 CCDC192P0DO97 292 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 CALM1P0DP23 149 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 CALM2P0DP24 149 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 CALM3P0DP25 149 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 CEACAM1P13688 526 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 PSMC3P17980 439 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 AKAP5P24588 427 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 OR1D2P34982 312 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 AP3B2Q13367 1082 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 LRRC32Q14392 662 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 DAB2IPQ5VWQ8 1189 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 TTC8Q8TAM2 541 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 ADAM32Q8TC27 787 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 ASB16Q96NS5 453 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 KLK14Q9P0G3 267 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 PCDHGA5Q9Y5G8 931 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 SPAG17Q6Q759 2223 aa17.22■□□□□ 0.35
CLSTN3-216ENST00000545663 SLC38A8A6NNN8 435 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 DDX11L8A8MPP1 907 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 ARNTLO00327 626 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 CCR2P41597 374 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 RAB33AQ14088 237 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 HSP90AA2PQ14568 343 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 UVSSAQ2YD98 709 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 PRSS36Q5K4E3 855 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 PKN3Q6P5Z2 889 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 DEFB124Q8NES8 71 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 PRPF31Q8WWY3 499 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 LENG9Q96B70 501 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 CPB2Q96IY4 423 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 UNC45AQ9H3U1 944 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 MSRB2Q9Y3D2 182 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 COL4A3BPQ9Y5P4 624 aa17.21■□□□□ 0.35
CLSTN3-216ENST00000545663 SF3B1O75533 1304 aaKnown RBP eCLIP17.21■□□□□ 0.343e-9■■■■■ 206.8
CLSTN3-216ENST00000545663 LNP1A1A4G5 178 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 CCDC69A6NI79 296 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 HIP1O00291 1037 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 ZNF263O14978 683 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 PRC1O43663 620 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 IGFBP6P24592 240 aaPredicted RBP17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 SETQ01105 290 aaPredicted RBP17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 AAMPQ13685 434 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 XKR3Q5GH77 459 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 PROSER1Q86XN7 944 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 PLEKHM2Q8IWE5 1019 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 ZNF579Q8NAF0 562 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 FANCBQ8NB91 859 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 CNNM3Q8NE01 707 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 ZC3H10Q96K80 434 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 CORO1BQ9BR76 489 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 NXF3Q9H4D5 531 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 POLR3BQ9NW08 1133 aaPredicted RBP17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 ANKFY1Q9P2R3 1169 aa17.2■□□□□ 0.34
CLSTN3-216ENST00000545663 WDR27A2RRH5 827 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 SH2B2O14492 632 aaPredicted RBP17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 MSH4O15457 936 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 KIF4AO95239 1232 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 PTPN2P17706 415 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 CSRP1P21291 193 aaKnown RBP17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 CREB5Q02930 508 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 PLK5Q496M5 336 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 PLA2G4FQ68DD2 849 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 PPP1R18Q6NYC8 613 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 SRGAP1Q7Z6B7 1085 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 TMEM143Q96AN5 459 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 RSPRY1Q96DX4 576 aa17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 DUSP15Q9H1R2 295 aaPredicted RBP17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 AVENQ9NQS1 362 aaPredicted RBP17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 V9GY48 417 aaPredicted RBP17.19■□□□□ 0.34
CLSTN3-216ENST00000545663 TDRD15B5MCY1 1934 aaKnown RBP17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 CASTOR2A6NHX0 329 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 CDX4O14627 284 aaPredicted RBP17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 DCLK1O15075 740 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 CAVIN2O95810 425 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 KPNA1P52294 538 aaPredicted RBP17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 ANO5Q75V66 913 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 GPIHBP1Q8IV16 184 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 SMARCD2Q92925 531 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 UNC79Q9P2D8 2635 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 CNTNAP5Q8WYK1 1306 aa17.18■□□□□ 0.34
CLSTN3-216ENST00000545663 CFAP46Q8IYW2 2715 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 EDIL3O43854 480 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 TSPAN1O60635 241 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 GJA1P17302 382 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 NPEPPSP55786 919 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 LAMTOR4Q0VGL1 99 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 FUT2Q10981 343 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 PON2Q15165 354 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 UAP1L1Q3KQV9 507 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 DGKKQ5KSL6 1271 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 CASC1Q6TDU7 716 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 BMP2KQ9NSY1 1161 aaPredicted RBP17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 BARHL2Q9NY43 387 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 GIT1Q9Y2X7 761 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 CDY1Q9Y6F8 540 aa17.17■□□□□ 0.34
CLSTN3-216ENST00000545663 CACNA1EQ15878 2313 aa17.16■□□□□ 0.34
CLSTN3-216ENST00000545663 SPAARA0A1B0GVQ0 90 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms