RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 RARRES1P49788 294 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 NPEPPSP55786 919 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 SNW1Q13573 536 aaKnown RBP9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 UBXN2BQ14CS0 331 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 TMEM119Q4V9L6 283 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 VARS2Q5ST30 1063 aaKnown RBP9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 AXDND1Q5T1B0 1012 aaPredicted RBP9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 PLA2G4FQ68DD2 849 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 PJA1Q8NG27 643 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 PIGOQ8TEQ8 1089 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 LEO1Q8WVC0 666 aaPredicted RBP9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 CALML4Q96GE6 196 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 SHDQ96IW2 340 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 CEP170P1Q96L14 293 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 B3GALT6Q96L58 329 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 SPATA32Q96LK8 384 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 CLIC6Q96NY7 704 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 TRAIPQ9BWF2 469 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 APOL6Q9BWW8 343 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 DHX33Q9H6R0 707 aaKnown RBP9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 BMP2KQ9NSY1 1161 aaPredicted RBP9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 AGPAT5Q9NUQ2 364 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 MARCH5Q9NX47 278 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 DLGAP2Q9P1A6 1054 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 USP18Q9UMW8 372 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 KIAA1024Q9UPX6 916 aa9.6□□□□□ -0.87
CLSTN3-212ENST00000541770 DGAT1O75907 488 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 ITGA4P13612 1032 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 GLULP15104 373 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 NCLP19338 710 aaKnown RBP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 FSHRP23945 695 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 TXLNAP40222 546 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 GPC5P78333 572 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 CSTF1Q05048 431 aaKnown RBP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 XKR9Q5GH70 373 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 CYP26C1Q6V0L0 522 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 SUMF1Q8NBK3 374 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 ATRIPQ8WXE1 791 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 SLC7A3Q8WY07 619 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 SECISBP2LQ93073 1101 aaKnown RBP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 ZNF707Q96C28 371 aaPredicted RBP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 EPSTI1Q96J88 318 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 CDK5RAP3Q96JB5 506 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 PNMA5Q96PV4 448 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 RPP25Q9BUL9 199 aaKnown RBP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 BCO2Q9BYV7 579 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 DDX19AQ9NUU7 478 aaKnown RBP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 CDV3Q9UKY7 258 aaKnown RBP9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 PCDHA7Q9UN72 937 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 POLIQ9UNA4 740 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 DNM3Q9UQ16 869 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 COL4A3BPQ9Y5P4 624 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 DOCK6Q96HP0 2047 aa9.59□□□□□ -0.87
CLSTN3-212ENST00000541770 ARID2Q68CP9 1835 aa9.59□□□□□ -0.88
CLSTN3-212ENST00000541770 CNTNAP2Q9UHC6 1331 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 KANSL1LA0AUZ9 987 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 ARHGEF35A5YM69 484 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 F8W810 466 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 TGM5O43548 720 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 NR1I2O75469 434 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 ERLIN2O94905 339 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 RPL17P18621 184 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 MLH1P40692 756 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 ME1P48163 572 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 ATXN1P54253 815 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 HTR4Q13639 388 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 KIAA0319Q5VV43 1072 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 ADALQ6DHV7 355 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 PARM1Q6UWI2 310 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 USP49Q70CQ1 688 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 GRASPQ7Z6J2 395 aaPredicted RBP9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 MRPL10Q7Z7H8 261 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 COLGALT2Q8IYK4 626 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 TCP11Q8WWU5 503 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 FGF14Q92915 247 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 TMEM143Q96AN5 459 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 CHAMP1Q96JM3 812 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 CCDC43Q96MW1 224 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 GAD1Q99259 594 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 COLEC11Q9BWP8 271 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 PRKD2Q9BZL6 878 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 PLEKHA4Q9H4M7 779 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 IFT122Q9HBG6 1241 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 RXFP1Q9HBX9 757 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 SLC2A4RGQ9NR83 387 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 CCDC39Q9UFE4 941 aa9.58□□□□□ -0.88
CLSTN3-212ENST00000541770 A0A087WWV3 80 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 DCDC2BA2VCK2 349 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 FAM170BA6NMN3 283 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 ANHXE9PGG2 379 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 E9PMD0 336 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 ASAP2O43150 1006 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 CYP11B2P19099 503 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 PLCG1P19174 1290 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 CD72P21854 359 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 SDHBP21912 280 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 CMA1P23946 247 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 SCNN1GP51170 649 aa9.57□□□□□ -0.88
CLSTN3-212ENST00000541770 STARD6P59095 220 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms