RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	PRKD1	Q15139	912 aa	Predicted RBP	4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	KRTAP15-1	Q3LI76	137 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	HS1BP3	Q53T59	392 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	TAF7L	Q5H9L4	462 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	EEF1DP3	Q658K8	133 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	RCSD1	Q6JBY9	416 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	CDC42EP5	Q6NZY7	148 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	CD300LD	Q6UXZ3	194 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	DEFB128	Q7Z7B8	93 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	STK32C	Q86UX6	486 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	ZC3H18	Q86VM9	953 aa	Known RBP	4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	FAM26E	Q8N5C1	309 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	ARID3A	Q99856	593 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	ALG13	Q9NP73	1137 aa	Known RBP	4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	CNNM1	Q9NRU3	951 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	CLDND1	Q9NY35	253 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	SLC5A4	Q9NY91	659 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	DLL3	Q9NYJ7	618 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	SF3B6	Q9Y3B4	125 aa	Known RBP	4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	FAM186A	A6NE01	2351 aa		4.92	□□□□□ -1.62
YBX3-205	ENST00000536107	RFX7	Q2KHR2	1363 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	DNAH14	Q0VDD8	3507 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107		A0A087X1B8	175 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	ARVCF	O00192	962 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	NARS	O43776	548 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	LMNA	P02545	664 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	CD3E	P07766	207 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	HOXA7	P31268	230 aa	Predicted RBP	4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	RBM10	P98175	930 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	GRB14	Q14449	540 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	PTPRO	Q16827	1216 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	HERC6	Q8IVU3	1022 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	KBTBD2	Q8IY47	623 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	FIBCD1	Q8N539	461 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	PHOSPHO2	Q8TCD6	241 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	BRF1	Q92994	677 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	VOPP1	Q96AW1	172 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	PABPC5	Q96DU9	382 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	SLC9A7	Q96T83	725 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	FTO	Q9C0B1	505 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	TMEM168	Q9H0V1	697 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	MEGF9	Q9H1U4	602 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	GP6	Q9HCN6	339 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	CTNNA3	Q9UI47	895 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	RABGAP1	Q9Y3P9	1069 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	LAS1L	Q9Y4W2	734 aa	Known RBP	4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	CACNA1H	O95180	2353 aa		4.91	□□□□□ -1.62
YBX3-205	ENST00000536107	DOCK3	Q8IZD9	2030 aa		4.9	□□□□□ -1.62
YBX3-205	ENST00000536107	ECM29	Q5VYK3	1845 aa		4.9	□□□□□ -1.62
YBX3-205	ENST00000536107	ARAP2	Q8WZ64	1704 aa		4.9	□□□□□ -1.62
YBX3-205	ENST00000536107	FAM208B	Q5VWN6	2430 aa		4.9	□□□□□ -1.62
YBX3-205	ENST00000536107	GVINP1	Q7Z2Y8	2422 aa		4.9	□□□□□ -1.62
YBX3-205	ENST00000536107		A0A0U1RQG5	324 aa	Predicted RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107		A0A1B0GUL7	405 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	DDX58	O95786	925 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	PDGFB	P01127	241 aa	Predicted RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	ADORA2A	P29274	412 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	KCNJ6	P48051	423 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	RGS3	P49796	1198 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	CDK7	P50613	346 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	BACE1	P56817	501 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	DAB2	P98082	770 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	IFIT5	Q13325	482 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	PICALM	Q13492	652 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	SMAD2	Q15796	467 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	KRT24	Q2M2I5	525 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	CAVIN4	Q5BKX8	364 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	FBXL19	Q6PCT2	694 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	UBE3B	Q7Z3V4	1068 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	REXO1	Q8N1G1	1221 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	SCLY	Q96I15	445 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	FAM84B	Q96KN1	310 aa	Predicted RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	TGS1	Q96RS0	853 aa	Known RBP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	SPC25	Q9HBM1	224 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	SIT1	Q9Y3P8	196 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	ELP1	O95163	1332 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	UMODL1	Q5DID0	1318 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	DMD	P11532	3685 aa		4.9	□□□□□ -1.63
YBX3-205	ENST00000536107	LCHN	A4D1U4	455 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	GREM1	O60565	184 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	PFKM	P08237	780 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	C6orf222	P0C671	652 aa	Predicted RBP	4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	AKR1A1	P14550	325 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	PMS1	P54277	932 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	NEXN	Q0ZGT2	675 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	ADAM9	Q13443	819 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	TCEAL5	Q5H9L2	206 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	LDHAL6A	Q6ZMR3	332 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	DCP2	Q8IU60	420 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	FAM126B	Q8IXS8	530 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	PCSK9	Q8NBP7	692 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	CYP2W1	Q8TAV3	490 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	MRPL38	Q96DV4	380 aa	Known RBP	4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	RIPOR3	Q96MK2	946 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	HAUS7	Q99871	368 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	OSBPL5	Q9H0X9	879 aa	Predicted RBP	4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	MFSD1	Q9H3U5	465 aa		4.89	□□□□□ -1.63
YBX3-205	ENST00000536107	L2HGDH	Q9H9P8	463 aa		4.89	□□□□□ -1.63

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