RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HMGN5P82970 282 aaKnown RBP12.51□□□□□ -0.41
VPS28-214ENST00000531032 ELAVL2Q12926 359 aaKnown RBP12.51□□□□□ -0.41
VPS28-214ENST00000531032 PSMD5Q16401 504 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 TMEM132AQ24JP5 1023 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 FAM171A1Q5VUB5 890 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 EEF1DP3Q658K8 133 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 GET4Q7L5D6 327 aaPredicted RBP12.51□□□□□ -0.41
VPS28-214ENST00000531032 KIFAP3Q92845 792 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 KIFC3Q9BVG8 833 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 BHMT2Q9H2M3 363 aa12.51□□□□□ -0.41
VPS28-214ENST00000531032 PRR23AA6NEV1 266 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 LIG1P18858 919 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 CCT6AP40227 531 aaKnown RBP12.5□□□□□ -0.41
VPS28-214ENST00000531032 HTR4Q13639 388 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 NBR1Q14596 966 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 NT5DC1Q5TFE4 455 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 LIN9Q5TKA1 542 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 ATF7IP2Q5U623 682 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 PDXDC1Q6P996 788 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.5□□□□□ -0.41
VPS28-214ENST00000531032 ASCL5Q7RTU5 278 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 CEP57Q86XR8 500 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 IGSF22Q8N9C0 903 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 IFT74Q96LB3 600 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 ZSCAN31Q96LW9 406 aaPredicted RBP12.5□□□□□ -0.41
VPS28-214ENST00000531032 PPP1R10Q96QC0 940 aaKnown RBP12.5□□□□□ -0.41
VPS28-214ENST00000531032 LRWD1Q9UFC0 647 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 NOL7Q9UMY1 257 aaKnown RBP12.5□□□□□ -0.41
VPS28-214ENST00000531032 KIAA1024Q9UPX6 916 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 GDAQ9Y2T3 454 aa12.5□□□□□ -0.41
VPS28-214ENST00000531032 ZFP37Q9Y6Q3 630 aaPredicted RBP12.5□□□□□ -0.41
VPS28-214ENST00000531032 DOCK6Q96HP0 2047 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 PHLPP2Q6ZVD8 1323 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 ADAM12O43184 909 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 C8AP07357 584 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 POU2F2P09086 479 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 FGFR3P22607 806 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 FSHRP23945 695 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 U2AF2P26368 475 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS28-214ENST00000531032 GNL2Q13823 731 aaKnown RBP12.49□□□□□ -0.41
VPS28-214ENST00000531032 PDIA5Q14554 519 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 APBB1IPQ7Z5R6 666 aaPredicted RBP12.49□□□□□ -0.41
VPS28-214ENST00000531032 FRMD5Q7Z6J6 570 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 DTWD2Q8NBA8 298 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 GPR152Q8TDT2 470 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 POLD4Q9HCU8 107 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 SLC2A4RGQ9NR83 387 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 SH2B1Q9NRF2 756 aaPredicted RBP12.49□□□□□ -0.41
VPS28-214ENST00000531032 DDX19AQ9NUU7 478 aaKnown RBP12.49□□□□□ -0.41
VPS28-214ENST00000531032 MTRRQ9UBK8 725 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 TNFSF13BQ9Y275 285 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 STK24Q9Y6E0 443 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 NUMBLQ9Y6R0 609 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 TRIP11Q15643 1979 aa12.49□□□□□ -0.41
VPS28-214ENST00000531032 RIF1Q5UIP0 2472 aaKnown RBP12.48□□□□□ -0.41
VPS28-214ENST00000531032 K7ERI5 159 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 B3GAT3O94766 335 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 IGFBP6P24592 240 aaPredicted RBP12.48□□□□□ -0.41
VPS28-214ENST00000531032 TOB1P50616 345 aaPredicted RBP12.48□□□□□ -0.41
VPS28-214ENST00000531032 CLCNKBP51801 687 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 PTGDRQ13258 359 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 RAB33AQ14088 237 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 ANGPT1Q15389 498 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 UPP1Q16831 310 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 GLRA4Q5JXX5 417 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 PPM1LQ5SGD2 360 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 PHLDB3Q6NSJ2 640 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 DCLRE1AQ6PJP8 1040 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 CD300LGQ6UXG3 332 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 GRASPQ7Z6J2 395 aaPredicted RBP12.48□□□□□ -0.41
VPS28-214ENST00000531032 FAM184AQ8NB25 1140 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 SNX29Q8TEQ0 813 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 NKD2Q969F2 451 aaPredicted RBP12.48□□□□□ -0.41
VPS28-214ENST00000531032 UROC1Q96N76 676 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 KIF2CQ99661 725 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 RAB34Q9BZG1 259 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 TBC1D17Q9HA65 648 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 PTPRHQ9HD43 1115 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 CDH7Q9ULB5 785 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 CA14Q9ULX7 337 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 MYH15Q9Y2K3 1946 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 FAM186AA6NE01 2351 aa12.48□□□□□ -0.41
VPS28-214ENST00000531032 SMIM28A0A1B0GU29 152 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 LAD1O00515 517 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 CCL16O15467 120 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 XYLBO75191 536 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 OR1D2P34982 312 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 GRM5P41594 1212 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 NPTX2P47972 431 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 NTHL1P78549 312 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 DMP1Q13316 513 aaPredicted RBP12.47□□□□□ -0.41
VPS28-214ENST00000531032 UVSSAQ2YD98 709 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 XKR4Q5GH76 650 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 ALKAL1Q6UXT8 129 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 RTL10Q7L3V2 364 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 DAW1Q8N136 415 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 CEP120Q8N960 986 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 C3orf58Q8NDZ4 430 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 SLC7A14Q8TBB6 771 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 FGF13Q92913 245 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms