RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 HOXD13P35453 343 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 DSC1Q08554 894 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 PNOCQ13519 176 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 KNOP1Q1ED39 458 aaKnown RBP15.55■□□□□ 0.08
NUP54-216ENST00000514901 SLC10A6Q3KNW5 377 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 COLGALT2Q8IYK4 626 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 SLC39A11Q8N1S5 342 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 GLIS3Q8NEA6 775 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 SPATA20Q8TB22 786 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 MYLIPQ8WY64 445 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 SMARCE1Q969G3 411 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 SNX27Q96L92 541 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 CNTN3Q9P232 1028 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 HCSTQ9UBK5 93 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 STXBP5LQ9Y2K9 1186 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 MYO7AQ13402 2215 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 CITO14578 2027 aa15.55■□□□□ 0.08
NUP54-216ENST00000514901 PRRC2BQ5JSZ5 2229 aaKnown RBP15.54■□□□□ 0.08
NUP54-216ENST00000514901 SMIM28A0A1B0GU29 152 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 RFXAPO00287 272 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 PTGESO14684 152 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 FAM189A1O60320 539 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 ITGB1P05556 798 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 ADRB2P07550 413 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 IGFBP4P22692 258 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 SLC11A1P49279 550 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 TUSC3Q13454 348 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 BMS1Q14692 1282 aaKnown RBP15.54■□□□□ 0.08
NUP54-216ENST00000514901 ARMCX5Q6P1M9 558 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 KIAA0895Q8NCT3 520 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 SPPL3Q8TCT6 385 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 GDPD5Q8WTR4 605 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 MRPL38Q96DV4 380 aaKnown RBP15.54■□□□□ 0.08
NUP54-216ENST00000514901 TMEM169Q96HH4 297 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 PPP1R10Q96QC0 940 aaKnown RBP15.54■□□□□ 0.08
NUP54-216ENST00000514901 COLEC11Q9BWP8 271 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 KIAA1586Q9HCI6 787 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 LMBRD1Q9NUN5 540 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 CPSF3Q9UKF6 684 aaKnown RBP15.54■□□□□ 0.08
NUP54-216ENST00000514901 PCDHA5Q9Y5H7 936 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 CDH23Q9H251 3354 aa15.54■□□□□ 0.08
NUP54-216ENST00000514901 TRIP11Q15643 1979 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 TTC26A0AVF1 554 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 TISP43B9A030 160 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 NRP1O14786 923 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 EXTL3O43909 919 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 OR1G1P47890 313 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 PPP2R3AQ06190 1150 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 ADGRE1Q14246 886 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 SEZ6Q53EL9 994 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 PDE12Q6L8Q7 609 aaKnown RBP15.53■□□□□ 0.08
NUP54-216ENST00000514901 NELFCDQ8IXH7 590 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 C12orf56Q8IXR9 622 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 DDX27Q96GQ7 796 aaKnown RBP15.53■□□□□ 0.08
NUP54-216ENST00000514901 IGSF21Q96ID5 467 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 UROC1Q96N76 676 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 ALG13Q9NP73 1137 aaKnown RBP15.53■□□□□ 0.08
NUP54-216ENST00000514901 DNAJB4Q9UDY4 337 aa15.53■□□□□ 0.08
NUP54-216ENST00000514901 TDRD15B5MCY1 1934 aaKnown RBP15.53■□□□□ 0.08
NUP54-216ENST00000514901 LACTBL1A8MY62 500 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 GRM6O15303 877 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 TGFB1I1O43294 461 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 XPOTO43592 962 aaKnown RBP15.52■□□□□ 0.08
NUP54-216ENST00000514901 IL18RAPO95256 599 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 CXCL8P10145 99 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 TNFSF9P41273 254 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 ACOT2P49753 483 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 ENOX2Q16206 610 aaKnown RBP15.52■□□□□ 0.08
NUP54-216ENST00000514901 DDX53Q86TM3 631 aaKnown RBP15.52■□□□□ 0.08
NUP54-216ENST00000514901 GUF1Q8N442 669 aaKnown RBP15.52■□□□□ 0.08
NUP54-216ENST00000514901 TMEM174Q8WUU8 243 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 POF1BQ8WVV4 589 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 CBWD1Q9BRT8 395 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 FAM213AQ9BRX8 229 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 IKZF4Q9H2S9 585 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 ASB7Q9H672 318 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 AGPAT3Q9NRZ7 376 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 DERAQ9Y315 318 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 MTCH2Q9Y6C9 303 aa15.52■□□□□ 0.08
NUP54-216ENST00000514901 NT5C1B-RDH14C9J2C7 533 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 PDXKO00764 312 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 CYP3A5P20815 502 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 RPL9P32969 192 aaKnown RBP15.51■□□□□ 0.07
NUP54-216ENST00000514901 PBX3P40426 434 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 MYBPC2Q14324 1141 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 NAB2Q15742 525 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 TIGD5Q53EQ6 642 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 COBLL1Q53SF7 1204 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 GLRA4Q5JXX5 417 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 ZBTB41Q5SVQ8 909 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 ZNF658Q5TYW1 1059 aaPredicted RBP15.51■□□□□ 0.07
NUP54-216ENST00000514901 NT5DC4Q86YG4 428 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 GPD1LQ8N335 351 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 ZMAT2Q96NC0 199 aaKnown RBP15.51■□□□□ 0.07
NUP54-216ENST00000514901 CXCL16Q9H2A7 254 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 PCIF1Q9H4Z3 704 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 NGRNQ9NPE2 291 aaKnown RBP15.51■□□□□ 0.07
NUP54-216ENST00000514901 TLR9Q9NR96 1032 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 HSPBP1Q9NZL4 362 aa15.51■□□□□ 0.07
NUP54-216ENST00000514901 KIAA1671Q9BY89 1806 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms