RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 EXOC1Q9NV70 894 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 SSX2IPQ9Y2D8 614 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 FAN1Q9Y2M0 1017 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 ATG2AQ2TAZ0 1938 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 C2orf71A6NGG8 1288 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 ARL5CA6NH57 179 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 GLP2RO95838 553 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 KRT18P05783 430 aaKnown RBP18.63■□□□□ 0.57
VIM-205ENST00000485947 PPP1R2P41236 205 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 SLC11A1P49279 550 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 ZP2Q05996 745 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 DSC1Q08554 894 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 PSMD2Q13200 908 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 PRPF4BQ13523 1007 aaKnown RBP18.63■□□□□ 0.57
VIM-205ENST00000485947 KMT5BQ4FZB7 885 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 ZNF658Q5TYW1 1059 aaPredicted RBP18.63■□□□□ 0.57
VIM-205ENST00000485947 RINT1Q6NUQ1 792 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 DYMQ7RTS9 669 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 PPFIBP1Q86W92 1011 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 CCDC65Q8IXS2 484 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 GPR65Q8IYL9 337 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 VPS52Q8N1B4 723 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 FAM200AQ8TCP9 573 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 DRC1Q96MC2 740 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 CCDC113Q9H0I3 377 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 ZBP1Q9H171 429 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 DNAJC25Q9H1X3 360 aa18.63■□□□□ 0.57
VIM-205ENST00000485947 FRMD3A2A2Y4 597 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 PER2O15055 1255 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 B4GALT5O43286 388 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 DDHD2O94830 711 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 CSPG5O95196 566 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 CXCL14O95715 111 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 ALADP13716 330 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 SCP2P22307 547 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 GUCY2CP25092 1073 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 DPCR1Q3MIW9 517 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 ARSHQ5FYA8 562 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 C1orf186Q6ZWK4 172 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 ZNF280BQ86YH2 543 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 COLGALT2Q8IYK4 626 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 GAD1Q99259 594 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 BPIFA3Q9BQP9 254 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 DNAJB4Q9UDY4 337 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 ODF2LQ9ULJ1 636 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 PCDHGC5Q9Y5F6 944 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 MYH11P35749 1972 aa18.62■□□□□ 0.57
VIM-205ENST00000485947 HIDE1A8MVS5 230 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 NT5C1B-RDH14C9J2C7 533 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 PI4K2BG5E9Z4 385 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 C1RP00736 705 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 PRKCBP05771 671 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 IDEP14735 1019 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 SSTR3P32745 418 aaPredicted RBP18.61■□□□□ 0.57
VIM-205ENST00000485947 ZNF165P49910 485 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 EHHADHQ08426 723 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 GRIK3Q13003 919 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 DCAF4L1Q3SXM0 396 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 COBLL1Q53SF7 1204 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 C11orf57Q6ZUT1 292 aaPredicted RBP18.61■□□□□ 0.57
VIM-205ENST00000485947 BSNDQ8WZ55 320 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 SNX27Q96L92 541 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 NTPCRQ9BSD7 190 aaKnown RBP18.61■□□□□ 0.57
VIM-205ENST00000485947 RUSC1Q9BVN2 902 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 GBP3Q9H0R5 595 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 RNF39Q9H2S5 420 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 TMEM134Q9H6X4 195 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 PANK4Q9NVE7 773 aa18.61■□□□□ 0.57
VIM-205ENST00000485947 FAM86C2PA6NEL3 165 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 K7ERI5 159 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 NRP1O14786 923 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 TBCAO75347 108 aaKnown RBP18.6■□□□□ 0.57
VIM-205ENST00000485947 NPTXRO95502 500 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 POMCP01189 267 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 GAP43P17677 238 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 BMP6P22004 513 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 MLH1P40692 756 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 ITIH3Q06033 890 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 DMP1Q13316 513 aaPredicted RBP18.6■□□□□ 0.57
VIM-205ENST00000485947 ISM2Q6H9L7 571 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 ANKRD54Q6NXT1 300 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 TMEM173Q86WV6 379 aaPredicted RBP18.6■□□□□ 0.57
VIM-205ENST00000485947 SUSD6Q92537 303 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 REEP2Q9BRK0 252 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 COLEC11Q9BWP8 271 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 RBSNQ9H1K0 784 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 NXF3Q9H4D5 531 aaKnown RBP18.6■□□□□ 0.57
VIM-205ENST00000485947 DZANK1Q9NVP4 752 aa18.6■□□□□ 0.57
VIM-205ENST00000485947 BARX2Q9UMQ3 279 aaPredicted RBP18.6■□□□□ 0.57
VIM-205ENST00000485947 CLASP2O75122 1294 aaKnown RBP18.59■□□□□ 0.57
VIM-205ENST00000485947 SOD2P04179 222 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 AFF1P51825 1210 aaKnown RBP18.59■□□□□ 0.57
VIM-205ENST00000485947 STIM1Q13586 685 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 TMEM132AQ24JP5 1023 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 GSTCDQ8NEC7 633 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 VN1R2Q8NFZ6 395 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 SPIRE2Q8WWL2 714 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 KCNN1Q92952 543 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 RPS6KC1Q96S38 1066 aa18.59■□□□□ 0.57
VIM-205ENST00000485947 EMILIN2Q9BXX0 1053 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms