RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 KCTD10Q9H3F6 313 aa18.48■□□□□ 0.55
SCAF11-206ENST00000474828 DNAJB4Q9UDY4 337 aa18.48■□□□□ 0.55
SCAF11-206ENST00000474828 HOOK1Q9UJC3 728 aaKnown RBP18.48■□□□□ 0.55
SCAF11-206ENST00000474828 AGO2Q9UKV8 859 aaKnown RBP18.48■□□□□ 0.55
SCAF11-206ENST00000474828 INPP5FQ9Y2H2 1132 aa18.48■□□□□ 0.55
SCAF11-206ENST00000474828 PCDHA5Q9Y5H7 936 aa18.48■□□□□ 0.55
SCAF11-206ENST00000474828 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.48■□□□□ 0.55
SCAF11-206ENST00000474828 SMIM28A0A1B0GU29 152 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 POMCP01189 267 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 ITGB1P05556 798 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 YARSP54577 528 aaKnown RBP18.47■□□□□ 0.55
SCAF11-206ENST00000474828 TUSC3Q13454 348 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 ENOX2Q16206 610 aaKnown RBP18.47■□□□□ 0.55
SCAF11-206ENST00000474828 ZBTB41Q5SVQ8 909 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 CD302Q8IX05 232 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 GUF1Q8N442 669 aaKnown RBP18.47■□□□□ 0.55
SCAF11-206ENST00000474828 ZMAT2Q96NC0 199 aaKnown RBP18.47■□□□□ 0.55
SCAF11-206ENST00000474828 CERS4Q9HA82 394 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 KLK14Q9P0G3 267 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 GDAQ9Y2T3 454 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 REV3LO60673 3130 aa18.47■□□□□ 0.55
SCAF11-206ENST00000474828 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.46■□□□□ 0.55
SCAF11-206ENST00000474828 RFXAPO00287 272 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 FGF18O76093 207 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 LDHAP00338 332 aaKnown RBP18.46■□□□□ 0.55
SCAF11-206ENST00000474828 THP07101 528 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 TNFSF9P41273 254 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 SLC11A1P49279 550 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 ALDH7A1P49419 539 aaKnown RBP18.46■□□□□ 0.55
SCAF11-206ENST00000474828 GPM6BQ13491 265 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 NFIL3Q16649 462 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 TPRNQ4KMQ1 711 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 SLC9A9Q8IVB4 645 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 RNF168Q8IYW5 571 aaPredicted RBP18.46■□□□□ 0.55
SCAF11-206ENST00000474828 SYCP3Q8IZU3 236 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 CCDC47Q96A33 483 aaKnown RBP18.46■□□□□ 0.55
SCAF11-206ENST00000474828 AGPAT3Q9NRZ7 376 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 DMAC2Q9NW81 257 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 RMND1Q9NWS8 449 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 SPG21Q9NZD8 308 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 STK39Q9UEW8 545 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 MTUS1Q9ULD2 1270 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 MTCH2Q9Y6C9 303 aa18.46■□□□□ 0.55
SCAF11-206ENST00000474828 PDXKO00764 312 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 NRP1O14786 923 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 GRM6O15303 877 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 SMC2O95347 1197 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 ALDH2P05091 517 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 MCCD1P59942 119 aaPredicted RBP18.45■□□□□ 0.54
SCAF11-206ENST00000474828 RNASELQ05823 741 aaKnown RBP18.45■□□□□ 0.54
SCAF11-206ENST00000474828 MYBPC2Q14324 1141 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 SEZ6Q53EL9 994 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 TMEM173Q86WV6 379 aaPredicted RBP18.45■□□□□ 0.54
SCAF11-206ENST00000474828 GOLGA5Q8TBA6 731 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 MYLIPQ8WY64 445 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 POMGNT1Q8WZA1 660 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 MRPL38Q96DV4 380 aaKnown RBP18.45■□□□□ 0.54
SCAF11-206ENST00000474828 IGSF21Q96ID5 467 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 RPS6KC1Q96S38 1066 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 CBWD1Q9BRT8 395 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 ASB7Q9H672 318 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 MARCH5Q9NX47 278 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 TRAF3IP3Q9Y228 551 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 DERAQ9Y315 318 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 EYSQ5T1H1 3165 aa18.45■□□□□ 0.54
SCAF11-206ENST00000474828 TMEM189-UBE2V1I3L0A0 370 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 EXTL3O43909 919 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 ZC3H11AO75152 810 aaKnown RBP eCLIP18.44■□□□□ 0.54
SCAF11-206ENST00000474828 KIF20AO95235 890 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 CXCL8P10145 99 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 CYP3A5P20815 502 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 DNAJB1P25685 340 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 OSTNP61366 133 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 ZCWPW2Q504Y3 356 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 ZNF658Q5TYW1 1059 aaPredicted RBP18.44■□□□□ 0.54
SCAF11-206ENST00000474828 GDPD5Q8WTR4 605 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 BCL7CQ8WUZ0 217 aaPredicted RBP18.44■□□□□ 0.54
SCAF11-206ENST00000474828 SMARCE1Q969G3 411 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 UROC1Q96N76 676 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 KIAA1586Q9HCI6 787 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 SLC38A7Q9NVC3 462 aa18.44■□□□□ 0.54
SCAF11-206ENST00000474828 TDRD15B5MCY1 1934 aaKnown RBP18.43■□□□□ 0.54
SCAF11-206ENST00000474828 LACTBL1A8MY62 500 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 FSCN2O14926 492 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 HARSP12081 509 aaKnown RBP18.43■□□□□ 0.54
SCAF11-206ENST00000474828 PBX3P40426 434 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 PDE12Q6L8Q7 609 aaKnown RBP18.43■□□□□ 0.54
SCAF11-206ENST00000474828 FOXR2Q6PJQ5 311 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 HS2ST1Q7LGA3 356 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 DDX53Q86TM3 631 aaKnown RBP18.43■□□□□ 0.54
SCAF11-206ENST00000474828 BRSK2Q8IWQ3 736 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 GPR65Q8IYL9 337 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 ZSWIM2Q8NEG5 633 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 FAM193BQ96PV7 902 aaPredicted RBP18.43■□□□□ 0.54
SCAF11-206ENST00000474828 GAS2L1Q99501 681 aaPredicted RBP18.43■□□□□ 0.54
SCAF11-206ENST00000474828 VN1R3Q9BXE9 311 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 RPF1Q9H9Y2 349 aaKnown RBP18.43■□□□□ 0.54
SCAF11-206ENST00000474828 FAN1Q9Y2M0 1017 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 C2CD2Q9Y426 696 aa18.43■□□□□ 0.54
SCAF11-206ENST00000474828 IRAK3Q9Y616 596 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms