RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DPP7Q9UHL4 492 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 K7ERI5 159 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 IGFBP6P24592 240 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 GLRA4Q5JXX5 417 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 HYIQ5T013 277 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 ELMSAN1Q6PJG2 1045 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 CYP26C1Q6V0L0 522 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 CEP120Q8N960 986 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 ACSF2Q96CM8 615 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 PPP1R10Q96QC0 940 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 PLEKHA4Q9H4M7 779 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 PTPRHQ9HD43 1115 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 WDR6Q9NNW5 1121 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 TNFSF13BQ9Y275 285 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 CLUHO75153 1309 aa20.67■□□□□ 0.9
CCDC88B-206ENST00000473405 CCDC169A6NNP5 214 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 CREMQ03060 361 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 TCF15Q12870 199 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 DMP1Q13316 513 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 FAM171A1Q5VUB5 890 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 ALYREFQ86V81 257 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 PIK3R5Q8WYR1 880 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 DRC1Q96MC2 740 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 PNMA5Q96PV4 448 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 ACO2Q99798 780 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 TTPALQ9BTX7 342 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 CDT1Q9H211 546 aa20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 DAXXQ9UER7 740 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-206ENST00000473405 LNX1Q8TBB1 728 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-206ENST00000473405 SMG7Q92540 1137 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-206ENST00000473405 CLSTN3Q9BQT9 956 aa20.65■□□□□ 0.9
CCDC88B-206ENST00000473405 NT5C3AQ9H0P0 336 aa20.65■□□□□ 0.9
CCDC88B-206ENST00000473405 TMEM134Q9H6X4 195 aa20.65■□□□□ 0.9
CCDC88B-206ENST00000473405 KCNK12Q9HB15 430 aa20.65■□□□□ 0.9
CCDC88B-206ENST00000473405 ZDHHC7Q9NXF8 308 aa20.65■□□□□ 0.9
CCDC88B-206ENST00000473405 VWA3AA6NCI4 1184 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 TMEM189-UBE2V1I3L0A0 370 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 ABLIM1O14639 778 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 PROZP22891 400 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 GUCY2CP25092 1073 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 AVPR2P30518 371 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 GRM5P41594 1212 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 CLCNKBP51801 687 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 PTPN5P54829 565 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 PSMD5Q16401 504 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 ZNF568Q3ZCX4 644 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 CD300LGQ6UXG3 332 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 TBC1D32Q96NH3 1257 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 PRRX2Q99811 253 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 TARS2Q9BW92 718 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 MRPL4Q9BYD3 311 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 GOLGA2P5Q9HBQ8 144 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 KMT5AQ9NQR1 393 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 FBXW11Q9UKB1 542 aa20.64■□□□□ 0.89
CCDC88B-206ENST00000473405 H3BQV1 296 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 ADAM12O43184 909 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 MRE11P49959 708 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 SOX4Q06945 474 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 ELAVL2Q12926 359 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 ZRSR1Q15695 479 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 XKR4Q5GH76 650 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 ALKAL1Q6UXT8 129 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 APBB1IPQ7Z5R6 666 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 CEP57Q86XR8 500 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 C3orf58Q8NDZ4 430 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 MYADMQ96S97 322 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 PHOX2BQ99453 314 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 TIPINQ9BVW5 301 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 PRKD2Q9BZL6 878 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 C17orf75Q9HAS0 396 aa20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 UPF2Q9HAU5 1272 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-206ENST00000473405 NOTCH4Q99466 2003 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 SMIM28A0A1B0GU29 152 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 SFI1A8K8P3 1242 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 SLC16A4O15374 487 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 MEFVO15553 781 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 ZMYND10O75800 440 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 FGFR3P22607 806 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 MCM2P49736 904 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 SLC12A3P55017 1021 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 OSTNP61366 133 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 RAD51AP2Q09MP3 1159 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 TDGQ13569 410 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 UPP1Q16831 310 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 TMEM119Q4V9L6 283 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 ARL6IP4Q66PJ3 421 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 STAMQ92783 540 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 PLIN2Q99541 437 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 NTPCRQ9BSD7 190 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 TOPORSQ9NS56 1045 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 EPS15L1Q9UBC2 864 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 DUSP12Q9UNI6 340 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 RBM19Q9Y4C8 960 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 ZNF292O60281 2723 aa20.62■□□□□ 0.89
CCDC88B-206ENST00000473405 B3GAT3O94766 335 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 MCF2P10911 925 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 GBP2P32456 591 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 KCTD17Q8N5Z5 321 aa20.61■□□□□ 0.89
CCDC88B-206ENST00000473405 TMEM105Q8N8V8 129 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms